Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24300 857 / 0 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT3G01180 505 / 7e-170 ATSS2 starch synthase 2 (.1) AT1G32900 329 / 5e-104 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G18240 240 / 1e-67 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 198 / 3e-53 ATSS3 starch synthase 3 (.1.2) AT5G01220 54 / 3e-07 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022398 [exp] 1284 / 0 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 475 / 2e-158 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 455 / 1e-150 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10008279 [exp] 342 / 9e-109 AT1G32900 883 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033245 [exp] 338 / 2e-107 AT1G32900 885 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10028133 [exp] 241 / 6e-68 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10023319 [exp] 237 / 1e-66 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 236 / 3e-66 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 233 / 8e-65 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012400 [exp] 951 / 0 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.017G084100 [exp] 489 / 5e-164 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.011G152200 [exp] 338 / 5e-107 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G449500 [exp] 327 / 9e-103 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G351800 [exp] 238 / 6e-67 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 192 / 1e-52 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 196 / 2e-52 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 98 / 7e-21 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G097600 [exp] 57 / 3e-08 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.016G112600 [exp] 47 / 5e-05 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10018116 pacid=23145180 polypeptide=Lus10018116 locus=Lus10018116.g ID=Lus10018116.BGIv1.0 annot-version=v1.0 ATGGAGACTCTGTCACTCAGACACTGTGTTCATCAATCCTTCTCCAAGTCTGAACCCGTCAAGAGTACCAGAGGTTCTACTAGGCCCGTACTTGGTTTTG CTCACTTCTCTCGTACCAGCAATGCTCGCTTCCGATCGGTGGCCGCTGCTTCCGGTAAGGATTCGTCTTCCCCTCCATCAATTTTACCTGATAATCAGAA GAAGGAGGATGATGCAGCAAAGAAAGGGTTCTTGTTGGGAGCTGAGACCGACGCTTCTGGTTCCGTTGTTGGCTTCAATTTGACTTCTCACTCTCTCGCT GGTGATGCCGCAAGTCAACCTTCTGTAAAGAAAATTGCTGAGAAGGTAGAGGAGATTGCTGACACAGAAGGGACAGAAGAAGCTCTGACGAAAGTTATAC ACAGTATTGTTTTTGTTTCTTCTGAAGCAGCACCATATTCAAAGACTGGTGGTCTTGGAGATGTTTGTGGTTCGTTGCCAATTGCACTGGCTGCCCGAGG ACACCGTGTGATGGTTGTCACTCCTAGATATATGCATAGTCCTGAAAGCAAGACTTATGCCAGTGCTCTAGATGCAGACTGTCGAATCAAGATTTCATGT TTTGGCGCCGAACAAGAAGTGGCCTTTTTTCATGAATACAGGGACAAAGTTGATTGGATATTCGTAGACCATCCTTCTTATCACAGACCAGGAAATCCTT ATGGAGATACCAAAGGTGCTTTCGGTGACAATCAGTTTCGGTTCGCTTTACTCTGCTACGCTGCATGTGAAGCACCACTAGTGCTTCCCCTTGGAGGGTT CACCTATGGGGAGAAATGCTTGTTTCTTGTCAACGACTGGCATGCTAGCTTGGTTCCTGTGCTTTTGGCTGCTAAATACCGTCCATATGGTGTTTATAAG GACGCTCGATGTATTCTTGTCATACACAATCTTGCACATCAGGGAGTAGAGCCCGCATCAACATATGGTAATTTAGGCTTATCTCCCGAGTGGTATGGGG CATTGGGATGGGTTTTCCCTACATGGGCAAGGACCCATCCGCTTGACACAGGTGAAGCTATCAATATGCTGAAGGGTGCTATCGTGACATCAGACAGGAT ACTCACCGTTAGTAAGGGATATGCATGGGAAATAACAACTGTTGAAGGTGGTTATGGTCTTCAAGAGTTGTTGAGCAGTCGAAGGGTTGTTTTGAATGGA ATCACAAATGGCATTGATATCTGTGAATGGGATCCATCAAGTGATAAATTTACCGAATCCCATTATTCTGCTGATGATCTTTCTGGGAAGGTTCAGTGTA AGATGGCTTTGCAAAAGGAATTGGGTCTACCTGTTAGACCTGAATGTCCTCTGATTGGATTTATTGGGAGGTTAGACTACCAAAAGGGCATCGACATTAT TCGTTGGGCAATTCCTGAGCTTCTGCAAGATGATGTTCAATTCGTTATGCTTGGTTCTGGTGATCCCCTGTATGAGAACTGGATGAGAGAAGCAGAAGCT GTCTACAAAGACAAATTCCGGGGTTGGGTTGGATTTAATGTTCCGATTTCTCACAGAATAACTGCAGGTGCGGACATACTATTGATGCCTTCAAGATTCG AACCCTGCGGACTAAATCAGTTGTATGCAATGAGATACGGCACTGTACCAGTTGTTCACGGCACAGGAGGTCTTCGAGACACTGTGCAAACGTTCGATCC ATTCGCTCAGGAAGGTAAAGGTGATGGCACAGGGTGGACATTTGCTCCACTTACGAAGGATAGCATGTTATCGGCACTAAGAACGGCGGTAGAGACATAC AGGGATCACAAATCGTCGTGGGAAGGGATCATGAAGAGAGGTATGGAGAAGGACTACACTTGGGAGAATGCTGCGACACAGTACGAACAGAAACACGAGA ATGGGAAAACAGAAGCACACTGTGAAGCCGAGAGAAGGAAGCGTAACGAAAATGACACTTCCTTAGAAGCTGCAGCAGAGGGGAAGAAGTCCGTCTTTGT TCTTACCAGACCTTGA
AA sequence Show only first row Show all	>Lus10018116 pacid=23145180 polypeptide=Lus10018116 locus=Lus10018116.g ID=Lus10018116.BGIv1.0 annot-version=v1.0 METLSLRHCVHQSFSKSEPVKSTRGSTRPVLGFAHFSRTSNARFRSVAAASGKDSSSPPSILPDNQKKEDDAAKKGFLLGAETDASGSVVGFNLTSHSLA GDAASQPSVKKIAEKVEEIADTEGTEEALTKVIHSIVFVSSEAAPYSKTGGLGDVCGSLPIALAARGHRVMVVTPRYMHSPESKTYASALDADCRIKISC FGAEQEVAFFHEYRDKVDWIFVDHPSYHRPGNPYGDTKGAFGDNQFRFALLCYAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVPVLLAAKYRPYGVYK DARCILVIHNLAHQGVEPASTYGNLGLSPEWYGALGWVFPTWARTHPLDTGEAINMLKGAIVTSDRILTVSKGYAWEITTVEGGYGLQELLSSRRVVLNG ITNGIDICEWDPSSDKFTESHYSADDLSGKVQCKMALQKELGLPVRPECPLIGFIGRLDYQKGIDIIRWAIPELLQDDVQFVMLGSGDPLYENWMREAEA VYKDKFRGWVGFNVPISHRITAGADILLMPSRFEPCGLNQLYAMRYGTVPVVHGTGGLRDTVQTFDPFAQEGKGDGTGWTFAPLTKDSMLSALRTAVETY RDHKSSWEGIMKRGMEKDYTWENAATQYEQKHENGKTEAHCEAERRKRNENDTSLEAAAEGKKSVFVLTRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10018116 [exp]	0	1
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	1.0	0.9051
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10029321 [exp]	5.8	0.8234
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	6.5	0.8570
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	12.4	0.8265
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	12.5	0.8279
AT4G36640			Sec14p-like phosphatidylinosit...		Lus10023956 [exp]	12.9	0.7793
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031216 [exp]	14.6	0.8452
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10035408 [exp]	23.0	0.8136
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	23.7	0.8398
AT4G14605			Mitochondrial transcription te...		Lus10035227 [exp]	23.8	0.8433

Compare expression of checked genes

Lus10018116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.