Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53020 381 / 5e-122 Ribonuclease P protein subunit P38-related (.1) AT3G45900 87 / 6e-18 Ribonuclease P protein subunit P38-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022396 [exp] 1256 / 0 AT5G53020 414 / 1e-134 Ribonuclease P protein subunit P38-related (.1) Lus10034732 [exp] 88 / 6e-18 AT3G45900 264 / 3e-84 Ribonuclease P protein subunit P38-related (.1) Lus10033275 [exp] 87 / 2e-17 AT3G45900 268 / 2e-85 Ribonuclease P protein subunit P38-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016600 [exp] 658 / 0 AT5G53020 464 / 8e-153 Ribonuclease P protein subunit P38-related (.1) Potri.015G012000 [exp] 618 / 0 AT5G53020 379 / 6e-120 Ribonuclease P protein subunit P38-related (.1) Potri.001G130100 [exp] 75 / 8e-14 AT3G45900 281 / 8e-91 Ribonuclease P protein subunit P38-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018117 pacid=23145195 polypeptide=Lus10018117 locus=Lus10018117.g ID=Lus10018117.BGIv1.0 annot-version=v1.0 ATGGACGATGTAGATCGCCATGCTTCCAAGCTTTACCCAATTTGTTTCGGTGTATCTTGCGCTCTTTTCGCTCTCTCAAAAACCGACCAACAACAAAATC GCAACAAGTCAGAACCCATCACAAATCTGCTCAAGGGAACCGCCAGCTTACTGGGATTGCTGGTTTGGGAAATCCAGAGCAAAAATGAAGCTGAATTTGA GAAACGGAAAGACTTGTGCTTCAATCTTCAACTAAGACTCAAGGCGGCTGAGCTGGAGATCCACGAGCTGAAGCAAATCAGACGAGAGGACGCCAAGGCC AACGAGAAAGTCGTTGGGATCTTCGCCTCGCAAGAGCAGACCTGGTTTAACGAGAGGAAGAAGCTCAGGCTCCATATTGGAGCTCTAATGAACCAGTTGA GCAGTTTCCACAACGAAAAGGAGGCAACAGTTTCCGAATTTCACGGAAGAATTCAGGAAATGGAGGGTTTGTTGGAAGGCAAGAGCAAGGAGTTGGAGGA ATTGGGGGAGAAGGTGAGGAGAGCTGAAGATGTTGAAAAGGAATTGAGGGAAGTTATGAGGAAAGAAGCTCAAGAGCATTCCTCTGATTTGTGGAAGCAC AAGACTGCATTTTTGGAGTTGGTTTCTAACCAGAGACAGCTTGAAGCTGAGATGGGTAGAGCCATGAGGCAACTCGAGTCAAAAAGGTTAGAACTTGATT CTGTGATGGAACAGAAAGAGGAAGCCAATTCGTTGACGCAGAAGCTGTCTGGGGAAGTTGTGAAGTTGGGTAGAGATTTGGAGCAGAAAGATTTGATCTT GTCTGCAATGTTGAGGAAATCTAAGGCTGATATTGCTGAGAAGCAGATGTTGTTCAAGGAACTCAAGCTTTCCAAGGCTAAGAGGAAGCAAGCTTCAGTT CCTCATGCATCGCTACAAGATGCCAAAGGTAGATTGCATTCAGCTGGCTATGTGTTTGAGTATGAGAATCCTGAGTTCTTGAATGAATCAGCTGATATGG TTTCTCCCTTTTATGATTACTCCCCGGAAGGAAGGGCTGAATTAGCATCTGAAGTTCGGAGATTGGAAGGATGGGTTCGATCAGAAGCAGGGAAGTATGC AGCAGCAGTTGAGAAGAGACATCATCTGGAGATTGAAGCTTTTGTGGAGCAGCTGAGGCTCAAAGATGAGAAACTGGAAGCCTTTCAATGGAAGTCCATG AGCACAGAGATGGAATCCAAGAGGCTGCAATCTCATCTCGAAGCACTTAACCAGGACATGTCACAGCTCAGGCATGCCAATTTGAAACTGGAAGCGTCAT TTCTTAAGCAGCAAGGAATGTCACAATTAGAACAACAACATCACCATTTGGTGTCAAAGAACACTGCTATTAGTTCACCACCACAAGATGTCATCGAACA TCGTAAATCGGCGGGGCTAGATCATCAAACAGAAGCTGATGTTGAGGTTCATGAGGTTGTTGAGTCTCCTGAAAAGGAGTTTGATGAGGAAGAGAAGCAT GTGACCAACCAGGGTCCCGTTCGGGACAAGGCAAGCCCAAGTTCCATGGCAACAAACACCAAAGCATTGGTGATCAACAACACAAATGGGACTGCTCCAT TGAAGATGGATATTCATGCTCTGGGAATATCTTATAAGATCAAGAGGCTTAAACAACAGCTCCTGATGCTGGAAAGATTGACAGGAAAGCAAGAGAATGG AGAATATATAGGTGAACAACACGGGGTAAAGTACTTCTCAATGCTGATATCATTGCTCAATCGGCAAATCAGTAGGTATCAGACCCTTGAAGCAAAGACC GATGAACTATGCAAGCGTATGGTTAACAATGGTGTGGTTGACAATTCCTTGAGAAACTTGGAGAGAAGCAAAGGAGAGACCAAGACACTAGAGCATTTCC TGGACGAGACATTTCAGCTGCAGAGGTACATGGTTGCAACAGGGCAGAAACTGATGGAAGTGCAGACCAAGATTGGTTCGGAACTTGTGGAAGTCCCCGA GGAGTTGAACAAGTCTGGAAGTAGCATCAACATGAAGAGATTTGCAGAGAATGTGAGGACACTGTTCCAGGAAGTTCAAAGAGGTATGGAGGTTAGAATC TCGCGAATAATGGGGGATCTTGAAGGAACCTTAGCTCGCCAAGGCATGATACGTTTGAGGCGGTAG
AA sequence Show only first row Show all	>Lus10018117 pacid=23145195 polypeptide=Lus10018117 locus=Lus10018117.g ID=Lus10018117.BGIv1.0 annot-version=v1.0 MDDVDRHASKLYPICFGVSCALFALSKTDQQQNRNKSEPITNLLKGTASLLGLLVWEIQSKNEAEFEKRKDLCFNLQLRLKAAELEIHELKQIRREDAKA NEKVVGIFASQEQTWFNERKKLRLHIGALMNQLSSFHNEKEATVSEFHGRIQEMEGLLEGKSKELEELGEKVRRAEDVEKELREVMRKEAQEHSSDLWKH KTAFLELVSNQRQLEAEMGRAMRQLESKRLELDSVMEQKEEANSLTQKLSGEVVKLGRDLEQKDLILSAMLRKSKADIAEKQMLFKELKLSKAKRKQASV PHASLQDAKGRLHSAGYVFEYENPEFLNESADMVSPFYDYSPEGRAELASEVRRLEGWVRSEAGKYAAAVEKRHHLEIEAFVEQLRLKDEKLEAFQWKSM STEMESKRLQSHLEALNQDMSQLRHANLKLEASFLKQQGMSQLEQQHHHLVSKNTAISSPPQDVIEHRKSAGLDHQTEADVEVHEVVESPEKEFDEEEKH VTNQGPVRDKASPSSMATNTKALVINNTNGTAPLKMDIHALGISYKIKRLKQQLLMLERLTGKQENGEYIGEQHGVKYFSMLISLLNRQISRYQTLEAKT DELCKRMVNNGVVDNSLRNLERSKGETKTLEHFLDETFQLQRYMVATGQKLMEVQTKIGSELVEVPEELNKSGSSINMKRFAENVRTLFQEVQRGMEVRI SRIMGDLEGTLARQGMIRLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53020			Ribonuclease P protein subunit...		Lus10018117 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	14.4	0.8025
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	14.9	0.8113
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	20.2	0.7793
AT5G51160			Ankyrin repeat family protein ...		Lus10029007 [exp]	30.3	0.7641
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	31.3	0.7767
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10017542 [exp]	31.5	0.7526
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	32.0	0.7713
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	40.1	0.7739
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	40.7	0.7366
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10038488 [exp]	41.5	0.7410

Compare expression of checked genes

Lus10018117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.