Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 607 / 0 FAD-binding Berberine family protein (.1) AT2G34790 590 / 0 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44400 567 / 0 FAD-binding Berberine family protein (.1) AT5G44390 532 / 0 FAD-binding Berberine family protein (.1) AT5G44380 517 / 8e-180 FAD-binding Berberine family protein (.1) AT5G44360 465 / 1e-159 FAD-binding Berberine family protein (.1) AT1G30700 455 / 7e-156 FAD-binding Berberine family protein (.1) AT1G26380 446 / 6e-152 FAD-binding Berberine family protein (.1) AT4G20860 441 / 2e-150 FAD-binding Berberine family protein (.1) AT1G26420 440 / 5e-150 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036147 [exp] 928 / 0 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023361 [exp] 630 / 0 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 473 / 1e-162 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 455 / 2e-155 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 451 / 1e-154 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10039682 [exp] 442 / 1e-150 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 441 / 5e-150 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 439 / 4e-149 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 437 / 2e-148 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462800 [exp] 613 / 0 AT1G30760 659 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158700 [exp] 612 / 0 AT1G30760 664 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G463400 [exp] 593 / 0 AT1G30760 661 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 589 / 0 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 585 / 0 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159200 [exp] 584 / 0 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161100 [exp] 583 / 0 AT1G30760 639 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159100 [exp] 583 / 0 AT5G44400 614 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160400 [exp] 583 / 0 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 580 / 0 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10018119 pacid=23145221 polypeptide=Lus10018119 locus=Lus10018119.g ID=Lus10018119.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCACAGTTTGTGATTCTTCTTCTTGTTGCTCTGCTCTTTCCATCCCTCATCTATTGCCTTCCACTTCCATCACTAACCATCGGTAGCTTCC AAAAATGCCTGACCCAGAAATCCACATCTCCGATCCCATTCCACAAAACCTTGTTCACCAATAATTCCTCCTCCTCTGTTTTCAACTCTGCACTTTCCAG CACAGCTCAAAACCTCCGCTACTTGCTCCCTTCCGTACCCAAACCTCTACTCATCTTCCGCCCACACCGTATTGCCCACATCCAAGCCGCAGTCATCTGC GCTAGTAAACTCCGATTCCCATTCAGGGTCCGCAGCGGCGGCCACGATTACGAGGGCCTCTCTTACGCCACTCAAGTCGACTCCCCTTTCCTCATCCTTG ACCTCTCCAGATTCCGCAAGGTCAATGTAGATATTTCCTCCAACACTTCCTGGGTCCAGGCGGGTGCAACCGTCGGCGAGGTTTATTACAAAATTTCAGA AAAAAGCCCCGTCCATGGCTTTCCCGCCGGGCTCTGCACCAGCTTGGGAATCGGTGGCCATATTACCGGCGGTGCTTACGGATCCATGATGAGAAAGTAC GGTCTTGGTGTAGATAACGTCGTGGACGCTAGCATAATCGGTCCTAACGGTAAGCTGTTGAACCGTCAGGGGATGGGAGAGGACGTTTTCTGGGCAATCA GAGGAGGAGCTGGAGGGAGCTTCGGAGTAATTGTTGCCTGGAAATTGAAATTAGTCCCCGTTCCTAAAACCGTGACGGTTTTCAACGTCCCGTTGACGTT AGAACAGGGGGCTACAAAAGTATTGTACAAATGGCAGCAAGTCGCTGCTCATCTCGACGATGATTTATTCATTAGAGTTCTGATTGTGGCAACTCCAGTA GCGAATTCCACCACAAGAAGAACAGTGACGACGATATACAACGCTCTTTTTCTAGGGGATCGCGATCAGCTGCTGAAAATAATGGGTGCGAAATTTCCCG AGTTGGGTTTGGCGAAGAAGGATTGCTTGGAGATGAGCTGGATTAAATCGATTCTATTTATTGCCGGAATACCGGGCAACGTGGGCCCCGAGTTTCTTCT CCAAGGGAAGTCGTTTCTCAACCCTGCGTTTTTCAAGGCGAAGTCGGACTTTGTGAAGGAACCAGTGCCGGAGAAGGCGCTGGAAGGGATCTGGAGGAGG TTCTTGAAAGAGGAGAGTCCGTTGTCGATATGGAATCCGTACGGTGGTGAAATGGCGAGGATTGGGAAATCGGCTACGCCGTTTCCTCACCGGAAGGGTA CGTTGTTTATGATTCAATACTTGACAAGCTGGTCGGAGGGAAAGGGTGGGGAAAACATTGGTTGGATTAGGGAGCTTTACAACTACATGGCTCCCTACGT TAGCAAGTCGCCCAGAAGTGCGTATGTGAACTACAGGGATCTTGATTTGGGGATGAACAAGAAGAAAGGTAATACGAGTTCCATGGGCGAGGCAAATGTA TGGGGACGGAAGTACTTTAGGGAGAATTTCAACCGACTGGTGCAGATCAAGACAAAGTTTGATCCCAAGAATTTGTTTAGGCATGAACAGAGCATTCCTT CCCTTGTTGTTTGA
AA sequence Show only first row Show all	>Lus10018119 pacid=23145221 polypeptide=Lus10018119 locus=Lus10018119.g ID=Lus10018119.BGIv1.0 annot-version=v1.0 MASPQFVILLLVALLFPSLIYCLPLPSLTIGSFQKCLTQKSTSPIPFHKTLFTNNSSSSVFNSALSSTAQNLRYLLPSVPKPLLIFRPHRIAHIQAAVIC ASKLRFPFRVRSGGHDYEGLSYATQVDSPFLILDLSRFRKVNVDISSNTSWVQAGATVGEVYYKISEKSPVHGFPAGLCTSLGIGGHITGGAYGSMMRKY GLGVDNVVDASIIGPNGKLLNRQGMGEDVFWAIRGGAGGSFGVIVAWKLKLVPVPKTVTVFNVPLTLEQGATKVLYKWQQVAAHLDDDLFIRVLIVATPV ANSTTRRTVTTIYNALFLGDRDQLLKIMGAKFPELGLAKKDCLEMSWIKSILFIAGIPGNVGPEFLLQGKSFLNPAFFKAKSDFVKEPVPEKALEGIWRR FLKEESPLSIWNPYGGEMARIGKSATPFPHRKGTLFMIQYLTSWSEGKGGENIGWIRELYNYMAPYVSKSPRSAYVNYRDLDLGMNKKKGNTSSMGEANV WGRKYFRENFNRLVQIKTKFDPKNLFRHEQSIPSLVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10018119 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004180 [exp]	1.0	0.7524
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	11.5	0.6555
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10021849 [exp]	18.4	0.5748
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023452 [exp]	19.7	0.6192
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	21.1	0.6337
AT2G25270			unknown protein		Lus10014341 [exp]	23.4	0.6074
AT5G65030			unknown protein		Lus10014340 [exp]	28.2	0.6471
AT5G20690			Leucine-rich repeat protein ki...		Lus10038128 [exp]	31.6	0.5270
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	36.1	0.5944
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041829 [exp]	40.4	0.5935

Compare expression of checked genes

Lus10018119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.