Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45850 1518 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 1343 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 837 / 0 ATP binding microtubule motor family protein (.1) AT2G36200 782 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44050 250 / 3e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60930 244 / 3e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 242 / 4e-66 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19050 242 / 4e-65 POK2 phragmoplast orienting kinesin 2 (.1) AT2G22610 238 / 2e-64 Di-glucose binding protein with Kinesin motor domain (.1.2) AT3G17360 239 / 3e-64 POK1 phragmoplast orienting kinesin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036146 [exp] 1972 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 982 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 951 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 878 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 863 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10021340 [exp] 824 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 797 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 755 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012048 [exp] 253 / 1e-68 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026000 [exp] 1628 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 1618 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 1085 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 884 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.006G210700 [exp] 813 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 803 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 253 / 6e-69 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G193700 [exp] 252 / 9e-69 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G156000 [exp] 249 / 9e-68 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 244 / 5e-66 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10018120 pacid=23145232 polypeptide=Lus10018120 locus=Lus10018120.g ID=Lus10018120.BGIv1.0 annot-version=v1.0 ATGGAGTCTTCAGGGTCACAGCAGAGAAGAGCAGGTGGTTTGGTTTCGCAATCCCCCTCACAGACTCCGCGATCCACTGATAAAGCTCCCAGAGATCTAA GATCAGCAGATTCAGGTTTCGCTGCCAGACACGACAAAGATAAAGGTGTCAATGTGCAGGTCATTGTGCGTTGCAGGCCATTGAGCGAGGAAGAAATAAA GGTTCGTACACCAGCCGTGATTTCTTGCAATGAAAGTAGAAGGGTGGTCACGGCAGTTCAGAGTATTGCTAACAAGCAAATTGATAGAACCTTCCAATTT GACAAGGTTTTTGGTCCGAGTGCCAAACAGAAAGAATTGTATGATCTCGCGGTGTCTCCAATCGTTTATGAAGTTCTTGAGGGTTATAATTGCACAATCT TTGCCTACGGTCAGACAGGCACGGGAAAGACCTACACAATGGAAGGCGGAGCTAGGAAAAAGAATGGAGAATTTCCGGTCGATGCTGGTGTAATTCCAAG AGCTGTTGAACAAATTTTTAACATCTTAGAAGCACAGCATGCTGAGTACAATTTGAAAGTCACGTTTTTGGAGCTTTACAATGAGGAAATAACAGACCTG TTGGCCCCTGACGAAACTCCTAAGTTTGTTGATGACAAATCTAAGAAACCCATAGCCCTAATGGAAGATGGAAAAGGCGGTGTTTTTGTGAGGGGTCTGG AAGAAGAAATAGTATCTACTGCCAATGAGATCTACAAAATATTGGAGAAGGGTTCTGGAATGCGGCGCACAGCAGAGACTCTTCTTAATAAGCAAAGTAG TCGTTCTCATTCAATATTCTCCATCACCATTCATATTAAGGAATGTACTCCAGAAGGTGAAGAAGTGATCAGATGCGGAAAGCTGAATCTTGTTGATCTA GCCGGGTCTGAGAACATTTCCCGTTCTGGTGCACGAGAGGGCAGAGCAAGGGAAGCGGGAGAGATTAATAAAAGCCTGCTTACACTCGGTCGTGTGATAA ATACTCTTGTTGAGCATTCTGGACATATACCTTACAGGGACAGCAAGTTAACAAGACTACTGAGAGACTCATTGGGAGGTAAAACAAAGACTTGCATTAT TGCCAACATATCACCTTCTATTCAGTGTTTGGAGGAAACACTCAGTACATTAGATTATGCATATCGTGCCAAGAATATAAAAAACCGGCCAGAGATCAAT CAGAAGATGATGAAATCTGCCATGATTAAGGATCTGTACTCTGAAATTGATCACTTGAAGCAAGAGGTATATGCCGCAAGAGAGAAAAATGGTATCTACA TCCCACGAGATCGCTACCTTCAAGAAGAAGCTGAAAAGAAGGCAATGGCAGAAAAAATAGAGCGCATCGAAATAAATTCAGAGTCTAAAGACAAGCAATT GATGGAGATTCAGGAACTCTACAATGCACAGCTTCATATGACAGCTGACCTGACGGAGGAGCTTGATAAAACAAAGAGAAAGCTTGAAGAAACTGAAGAT TCATTGTTAGATCTCCAAGAGAAGCACTTGCAGGCCAATGCAACAATTAAGGAGAAAGAGTTCTTGATATCTAATCTTCTAAAATCTGAAAAAGCATTGG TGGAGCGTGCAGTTGAGCTGAGGGCAGAACTTGAGACTGCTGCATCTGATGTATCCAGCTTATTTTCTAAAATTGAGAGGAAAGATAAAATTGAAGGTGG AAATAGAGTACTTGTTCAGAAATTCCAGTCCCAGTTGACCCAGCAGCTAGAAATATTGCATAAGACTGTGGCATCCTCTGTCACCCAGCAAGAGGCGAAA TTGAATGATATGGAAGAAGATATGCATTCTTTCGTATCAATTAAGGATGAGGCTACCGAGGAACTTCGAGGAAAGGTTCGGAAGTTCAGACTGATGTATG GATCAAGGATCAAAGATTTGGATGATATGGCTAAACAGCTTGAAGAAAATTCTCAATCAACCTGTACCAGTTTAAACTCTCAAGTTTCAAAGCATTCACA CGCCCTTGAGGATCTTTTGCGGGGAATATCTTCAGAAGCTGATGCATTACTTATTGATCTCCAAAGTAGTCTACACAAGCAAGAGGAAAAGTTAACAGCT TATGCACAACAGCAGCGCGAGGCACATAGCAGAGCAGTGGAAACTGCACGATCAGTGTCCACAATCACAATAAATTTTTTCAAGACTCTTGATGTTCATG CTTCTAGCCTTAACCACATTGTTGAAGAAGCACAATCCGTAAATGATCAGAAGCTGTCTGATCTAGAAAGGAAATTTGAGGAGTGTGCTGCTAACGAGGA AAAGCAATTGTTAGAGAAAGTGGCGGAACTTCTGACGACTTCAAATCAAAGAAAGAAAAAGTTGGTTCAAATGGCTGTTGATGATCTGCGGGAGAGTGCT AACAGTAGAACCAGAAAACTGCAGCAAGAAATGTCCACGATGGAAGATTCAACATCAACAATTAAAGAACAATGGACTGTCCATATGGAAAAAACAGAAT TGAACTACCATGAGGACACATGTGCTGTAGAGAGTGGAAAGAGAGACTTGGAATCAGTCCTTCACAACTGTTTGGATAATGCTCAAATGGGTGCACAACA ATGGAAGAATGCTCAAGAATCGTTACTTCGCCTAGAAAAGGCCAACGTTGCATCAGTAGATTCCATTGTCAGAGATGGAATGGAAGCGAATCAAGCCCTA CGGATGCAGTTTTCTTCTGCAGTATCAGCTGCAAATAAAGATTCAGATGCGGCCAATACTGATCTTCTCTCCTCTATTGACAATTCATTAAGACTGGACC GTGAAGCATGCGGGAACATGGATTCCATGATTGGGCCATGTTGCGAGGATTTGAGGGAGTTGAAGGGAGGTCATTACCACAAAGTCGTAGAGATCACGGG CAATGCTGGAAAATGCCTTGTCGAAGAATATATGGTGGATGAACCATCTTGTTCAACACCAAGGAAGAGGGGAATCAATCTGCCGAGTATTGGGTCGATT GAGGAGCTGCGAACTCCTGCCTTTGAGGAGTTGTTGAGATGTTTCAGATCAACAAAGCAGCAGCAGCAGCAGTTATCCTACGGGGACATAAAACAAAATG GAGTGATGGTCGGAGGGGCTGCGGATGCGTACGAGTCGGGTAATAACAATAATGACACCCATCAATCTCAGAGAGACTCTAGAGTTCCTCTCACTGCTAT CAATTGA
AA sequence Show only first row Show all	>Lus10018120 pacid=23145232 polypeptide=Lus10018120 locus=Lus10018120.g ID=Lus10018120.BGIv1.0 annot-version=v1.0 MESSGSQQRRAGGLVSQSPSQTPRSTDKAPRDLRSADSGFAARHDKDKGVNVQVIVRCRPLSEEEIKVRTPAVISCNESRRVVTAVQSIANKQIDRTFQF DKVFGPSAKQKELYDLAVSPIVYEVLEGYNCTIFAYGQTGTGKTYTMEGGARKKNGEFPVDAGVIPRAVEQIFNILEAQHAEYNLKVTFLELYNEEITDL LAPDETPKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVSTANEIYKILEKGSGMRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEVIRCGKLNLVDL AGSENISRSGAREGRAREAGEINKSLLTLGRVINTLVEHSGHIPYRDSKLTRLLRDSLGGKTKTCIIANISPSIQCLEETLSTLDYAYRAKNIKNRPEIN QKMMKSAMIKDLYSEIDHLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERIEINSESKDKQLMEIQELYNAQLHMTADLTEELDKTKRKLEETED SLLDLQEKHLQANATIKEKEFLISNLLKSEKALVERAVELRAELETAASDVSSLFSKIERKDKIEGGNRVLVQKFQSQLTQQLEILHKTVASSVTQQEAK LNDMEEDMHSFVSIKDEATEELRGKVRKFRLMYGSRIKDLDDMAKQLEENSQSTCTSLNSQVSKHSHALEDLLRGISSEADALLIDLQSSLHKQEEKLTA YAQQQREAHSRAVETARSVSTITINFFKTLDVHASSLNHIVEEAQSVNDQKLSDLERKFEECAANEEKQLLEKVAELLTTSNQRKKKLVQMAVDDLRESA NSRTRKLQQEMSTMEDSTSTIKEQWTVHMEKTELNYHEDTCAVESGKRDLESVLHNCLDNAQMGAQQWKNAQESLLRLEKANVASVDSIVRDGMEANQAL RMQFSSAVSAANKDSDAANTDLLSSIDNSLRLDREACGNMDSMIGPCCEDLRELKGGHYHKVVEITGNAGKCLVEEYMVDEPSCSTPRKRGINLPSIGSI EELRTPAFEELLRCFRSTKQQQQQLSYGDIKQNGVMVGGAADAYESGNNNNDTHQSQRDSRVPLTAIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	1.4	0.9389
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	2.0	0.9253
AT4G20430			Subtilase family protein (.1.2...		Lus10023389 [exp]	2.4	0.9035
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	3.2	0.9013
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	4.0	0.8950
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	4.0	0.8865
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015333 [exp]	6.6	0.9031
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	7.1	0.8771
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	8.5	0.8892
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	11.0	0.8940

Compare expression of checked genes

Lus10018120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.