Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45830 729 / 0 unknown protein AT1G02290 128 / 3e-31 unknown protein AT5G13950 67 / 8e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036145 [exp] 2004 / 0 AT3G45830 1034 / 0.0 unknown protein Lus10028606 [exp] 144 / 5e-36 AT1G02290 206 / 7e-61 unknown protein Lus10018907 [exp] 143 / 1e-35 AT1G02290 210 / 3e-62 unknown protein Lus10031980 [exp] 58 / 4e-08 AT5G13950 438 / 2e-138 unknown protein Lus10035121 [exp] 51 / 9e-06 AT5G13950 292 / 1e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233800 [exp] 1021 / 0 AT3G45830 1075 / 0.0 unknown protein Potri.009G026100 [exp] 975 / 0 AT3G45830 1059 / 0.0 unknown protein Potri.002G184000 [exp] 140 / 2e-34 AT1G02290 231 / 2e-69 unknown protein Potri.014G109600 [exp] 139 / 1e-33 AT1G02290 229 / 3e-68 unknown protein Potri.002G237800 [exp] 64 / 7e-10 AT5G13950 556 / 0.0 unknown protein Potri.014G144100 [exp] 64 / 9e-10 AT5G13950 406 / 4e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018121 pacid=23145214 polypeptide=Lus10018121 locus=Lus10018121.g ID=Lus10018121.BGIv1.0 annot-version=v1.0 ATGGCGATTGAGAAGAACAACTTTAAGGTGTCTAGGTTTGATCCCGACTCTTCACCAAATAGCAGAGATACCGTGTCTAGTGATGATGATGAACATCAGC GCAGGGTTTCTGCTGCTGAGTCCGACGATGAAGATGACGAATTTGATGATGCAGATTCTGGGGCAGGATCTGATGATTTTGACTTGTTAGAGTTGGGGGA AACTGGAGCTGAGTTTTGCCAATTGGGTGACCTCACTTGCAGTGTTCCTTTTGAGTTGTATGATCTTCCTGGCTTACAAGATATACTGTCAGTGAATGTA TGGAATGATGTTCTGACTGAAGAGGAGAGATTTTGTCTTACAAAGTATCTGCCTGACATGGATGAGCTCACCTTTATGCAAACTCTGACAGAGCTCTTTG AAGGTGCAAATCTCCATTTTGGCAGCCCTGTGAAGAGGTTGTTTGAGATGTTGAAAGGAGGCTTATGTGAACCAAGGGTTGCACTTTATAGGGAAGGTTT GACTATTTTCCAAAAGAGACATCACTATCATCTACTTCGCAAGCATCAAAATAATGTGATTATCAATATGTGTCAGACAAGGGATGCTTGGCTTAAATGT AGGGGTAATAGTATTGATGAGAAGCTTAGGATTTTAAACATTATCAAGAGTCAAAAGATGTTGATGTCTGAAAACGTGGAAGAAGATTTTGGAAGTGACT CCTCAGAGCAACATCAGTTGGCCGATGCTTTTTGGGGAAAACGAGTCAAGGACAGAAAGGATGTGCGCAATGCCTCAAACAGGCCTGCCTCAAATCCAGA AGTTCCTTCACTTATGCCTCCAAAGGAACCGACAAAGTATGGGAAACAGAACATGAAGGGTAAGCTTAAGTTAGCTGGGTCCAAAGCGCCATCCTTGAAC GGCATGAGAAGTCCTCTTCCTCTTTTTGATGGTATGGAAGTGAATGCCAGAGCATATGGACATCCAGGGCCTCTTCCTCGTCAGAATAGGGTAGCTGGGT ATGACACAGGGAATATACTCTGTCTACAGGATCGGGCGAGAGCACGTGATCATTATGATAATGATGAGTATGAAGATAATGAAGAGGCCATTCATGTTGG TGCCAAACAGGAGCGTATTAAGGAACGTACCAGTGTGATAGACAAATCCAGGGGTTTGAAGTTTGGGAAGAATAAGCATCATTCAAGAACTAATGAACTA GGTGATGACAGTTACATGGGCTCGTCTTTCTCTTTCAGAAGTGATCTCAATGCTTATGGTAGGCACATAAATGCCTCTATGCAGCCGGAAGATGAACTAT TCAGTAAACCGCCTAATACCTGGCATTCTAATCAGCTGGGCAAAAAGTTGAAGTATCCTGAAATGGTTCAGCAATTTCCTTTTGGTGATCAGATGAAACC CCAGAGATTCAGTGCTGCACTGATTCCTCTGAAGGGTAATGGAACTGACTTATTGAATGATGATGAACCCATTTGGCATAAAAATAAATACGGAGAGGCT TTTTCCATGGGCAATTCTAAATACGAAGACTTCAATGGCAGAAGTAAGAATTGGAGTCCTGAATTTAATGTCAAAGGTTATGGAGCTTCTTCTCCTCAGG TGAGCGATAGAATTATTCTTTCTGAATTTAGAGATAAGCGGTTGCATGAGAAGGGCAGGAGAAATTTTGTACAGATTGGGGGACCTGTTAAGGGAGCATC AAGAGGGAAGGGGATGTATATGAGACGAGAAGAAACAGAGTCAGATTCATCTGAACCACTTGATGAAGGTGATGATGGGGAAGAAGGTAACACTCCTTTG ATTTATACGAAGCCTGTATACTCCAGGCGGACTAAGGAAGCTTCTAAATCCTCATGGTCAAAGTCCAGGTCAGATTTTACGAAGGCCGGCATTGGTAGCC CAGATATGCAGGACGATGAACAAGGCTTTGAAGATGTGCTTAATGATCGTGGTCATGTTTCAGGACATCTGTCTAGAGCTAAACAGAAAATGAAGATTCA ACACACAAGTCCTTTGGAGAGTTCTAGTGCTATACTGGATCAAAGCCTTCCCTTTGTTCCTGGTAATCTGAAAAATGACAGCAACAGAAAGGGAGTTCAT AAGTTGGGAAAGAATGGACGATCTCGTGCAGACTCAATTAACAGGTTGCAAGTCCACTCCTCGAAGTCCTATCCTTCTGACAGGAAGCAGATAGATATAG ACAGCTGTGATAATGTTGAGGGGGATGATGATATCTATGAAGCTCGTAATTTGGCAGATGAAAAGGCAGTAGGTAGATTGGGCAAGAGAGGAGAAAAAAT TGGGTCCCGTGTCCACAATAATCATGATAACTCCGAGATGTCATTGCTGAGGTGCAACTCGGTAAGAAAGAAACGGATGGCAAAATTAGAACCAATGGAC CTGGATGGCAGAGAAGATGTAAATTTGCAGTCTACAGTTGTGATGCAAACTGGCGAGTCTGTTCCATTGAAGAAAAAGGGGAAAAAGAAAGGACGGAATG ACAATGTTGCTGCTGGGCTGGAAACTCCCGAGCTACCTCCTGAAATTAAATTACCGGATTTGGAGGTGGAAATAAAACCACAGAAAAAGCCCTATATACC AATCACACCTACAGTTCATACTGGCTTCTCGTTTTCAGTTGTACACCTTCTTTCTGCAGTTCGCTTGGCAATGATCACTCGTCTTCCGGAGGATGCTTTG GAACCTACTGTGGTAAACAGACAGCACAAAGACGATTCAAATGGGTTTGTCTCTCCCGACGCCAATACAATAGAACATGCTCCTAGCTCAAATATCCCCT CTCTAACCTCTATGGAGATTGTTAATCGTGTCAAATCAAATCCAGGAGATCCTTGCATTCTTGAGACTCAAGAGCCACTTCAAGATTTGGTCAAAGGGGT TCTAAAGATATTTTCTTCGAAACCAGCAACTTTAGGAGCAAAGGATTGGAAGGTGCTTGTGGAGTACGAAAAGTCTACAAAACGCTGGTTCTGGAAAGGT CCAGTTTCTCAAACTTTAACAGATTCTGATGGCGTTGAGCAGGTGACATCCCCAGAATATTGGGGTCTGCCTAAGAAAATGCTGGTCAAGTTGGTGGATT GTTTTGCTAATTGGCTAAAAAGTCACCAGGAGACCCTTCAACAAATGGGAAGTCTTCCTGAGCCACCTTTATCATTGATGCAGTGTAACTTGGATGAGAA GGAAAGGTTCAGGGATTTGAGAGCTCAGAAGAGTCATAGCACCATCAGTCCAAACTCAGAGGAAGTAAGGTCTTACTTCAGGAAAGAAGAGTTCTTAAGG TATTCAATTCCTGACAGGGCATTCTCATACACGGCTGCAGATGGTAAGAAGTCTTTTGTGGCCCCATTGAGAAGGTTGCATTATGAACGTGATCCTTGTG TTCTGTATGACGGTGAAAGGAAGTTGTGGGTGTACCTGCACAGGGAGAGAGAGGAAGAAGATTTTGAGGATGACGGTACATCATCCACCAAAAAGTGGAA GAGGCAAAAGAAGGATTCTACTGATCAACCTGAACCTGAGCAAGGAGGAGGAGTGACTATGACTTTAAATGACCAATCTGGGTTTGAGTTGGGTTGTTCA GTCGGAGATGTTCCTGGTGTTGATAATTATACAAGTACGGGGGATGCGATGCAACAGAATATGGTGGTGGAGGAAGCGATGGATACTAGTCATGTTTCTG AGCTACAGGACTATCCGATGGGCGGCTGGGATGGCCTTAGCCTACAAGATGAAAAGCTACTATGTCAAGAAAACTCGACATTTCCTGGTGGGCTTTTGGG TTCAAGTTTGTGA
AA sequence Show only first row Show all	>Lus10018121 pacid=23145214 polypeptide=Lus10018121 locus=Lus10018121.g ID=Lus10018121.BGIv1.0 annot-version=v1.0 MAIEKNNFKVSRFDPDSSPNSRDTVSSDDDEHQRRVSAAESDDEDDEFDDADSGAGSDDFDLLELGETGAEFCQLGDLTCSVPFELYDLPGLQDILSVNV WNDVLTEEERFCLTKYLPDMDELTFMQTLTELFEGANLHFGSPVKRLFEMLKGGLCEPRVALYREGLTIFQKRHHYHLLRKHQNNVIINMCQTRDAWLKC RGNSIDEKLRILNIIKSQKMLMSENVEEDFGSDSSEQHQLADAFWGKRVKDRKDVRNASNRPASNPEVPSLMPPKEPTKYGKQNMKGKLKLAGSKAPSLN GMRSPLPLFDGMEVNARAYGHPGPLPRQNRVAGYDTGNILCLQDRARARDHYDNDEYEDNEEAIHVGAKQERIKERTSVIDKSRGLKFGKNKHHSRTNEL GDDSYMGSSFSFRSDLNAYGRHINASMQPEDELFSKPPNTWHSNQLGKKLKYPEMVQQFPFGDQMKPQRFSAALIPLKGNGTDLLNDDEPIWHKNKYGEA FSMGNSKYEDFNGRSKNWSPEFNVKGYGASSPQVSDRIILSEFRDKRLHEKGRRNFVQIGGPVKGASRGKGMYMRREETESDSSEPLDEGDDGEEGNTPL IYTKPVYSRRTKEASKSSWSKSRSDFTKAGIGSPDMQDDEQGFEDVLNDRGHVSGHLSRAKQKMKIQHTSPLESSSAILDQSLPFVPGNLKNDSNRKGVH KLGKNGRSRADSINRLQVHSSKSYPSDRKQIDIDSCDNVEGDDDIYEARNLADEKAVGRLGKRGEKIGSRVHNNHDNSEMSLLRCNSVRKKRMAKLEPMD LDGREDVNLQSTVVMQTGESVPLKKKGKKKGRNDNVAAGLETPELPPEIKLPDLEVEIKPQKKPYIPITPTVHTGFSFSVVHLLSAVRLAMITRLPEDAL EPTVVNRQHKDDSNGFVSPDANTIEHAPSSNIPSLTSMEIVNRVKSNPGDPCILETQEPLQDLVKGVLKIFSSKPATLGAKDWKVLVEYEKSTKRWFWKG PVSQTLTDSDGVEQVTSPEYWGLPKKMLVKLVDCFANWLKSHQETLQQMGSLPEPPLSLMQCNLDEKERFRDLRAQKSHSTISPNSEEVRSYFRKEEFLR YSIPDRAFSYTAADGKKSFVAPLRRLHYERDPCVLYDGERKLWVYLHREREEEDFEDDGTSSTKKWKRQKKDSTDQPEPEQGGGVTMTLNDQSGFELGCS VGDVPGVDNYTSTGDAMQQNMVVEEAMDTSHVSELQDYPMGGWDGLSLQDEKLLCQENSTFPGGLLGSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45830			unknown protein		Lus10018121 [exp]	0	1
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	1.0	0.9220
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	3.5	0.9042
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	4.4	0.8836
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	4.6	0.8973
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	4.9	0.9099
AT5G22450			unknown protein		Lus10004878 [exp]	5.7	0.8959
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	6.0	0.8954
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	6.9	0.8902
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	6.9	0.9001
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	7.2	0.8889

Compare expression of checked genes

Lus10018121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.