Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45780 1155 / 0 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT5G58140 949 / 0 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT5G47750 264 / 6e-78 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT2G36350 272 / 9e-78 Protein kinase superfamily protein (.1) AT5G40030 258 / 1e-76 Protein kinase superfamily protein (.1) AT4G26610 257 / 5e-76 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT3G52890 266 / 7e-76 KIPK KCBP-interacting protein kinase (.1.2) AT2G44830 262 / 1e-75 Protein kinase superfamily protein (.1) AT3G12690 256 / 6e-75 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 250 / 1e-73 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036144 [exp] 1416 / 0 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10026572 [exp] 954 / 0 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 889 / 0 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 882 / 0 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10013856 [exp] 301 / 3e-92 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10020571 [exp] 278 / 1e-81 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 272 / 2e-79 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10042911 [exp] 257 / 5e-76 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10038753 [exp] 256 / 9e-75 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342000 [exp] 1242 / 0 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.004G209700 [exp] 976 / 0 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 701 / 0 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170550 [exp] 266 / 3e-83 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G146700 [exp] 267 / 1e-76 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 261 / 2e-76 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 260 / 3e-76 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.004G186300 [exp] 264 / 1e-75 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 256 / 7e-74 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 250 / 1e-73 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08447 [flax] [poplar] PAS_3 PAS fold CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10018122 pacid=23145262 polypeptide=Lus10018122 locus=Lus10018122.g ID=Lus10018122.BGIv1.0 annot-version=v1.0 ATGGCACTCAGGGAGCCACCGGCAAACAGTGGAGCCGGCACGGCGGCCAAAAGGGCTGCGGAATGGGGGCTAGTACTCAAGACGGACAACGAGACAGGTA AGCCACAAGGAGTTTCCGTCAGGAATTCGGGCGGCGATGAAGGAATAAAGCAGGCCTCCGGTAATTCGAGAAGGGCTTCTGGTAATTCGGTGAGGAGCTC CGGCGAGTACTCCGACGACGCTGGAAACGAGAGCAGGGGGATTCCACGGGTTTCGGAAGACATCAAAGCCGCACTGTCTTCGTTCCAGCAGACGTTTGTG GTCTCGGACGGTACCAAACCTGATTACCCGATTCTGTACGCCAGCGAAGGGTTTTTCAAGATGACCGGTTACACCTCCAAAGAAGTCGTCGGGAGGAACT GCCGGTTCCTGCAAGGTGCGGACACTGACCCGGAAGATGTAGCGAAAATAAGGGAGGCGTTGGAGAGTGGGAAAAGTTACTGCGGAAGGTTACTGAATTA CAAGAAGGATGGGACTCCTTTCTGGAACCTTCTCACCATTACTCCCATCAAAGATGACAACGGCAACGTCCTCAAATTCATTGGAATGCAGGTAGAAGTG AGCAAATTCACGGAAGGGTCCAAGGATAAGTCCCTACGTCCCAATGGGTTGCCTGAATCTTTGATTCGCTATGATGCACGGCAAAAGGAGCTTGCTGCAA GTTCAGTTACTGAATTAGTTGAAGCAGTGAAGAGACCACCACGTCCACGTTGTGAATCGAAGACGAAGCGTCCAGTTTTCAGAAAATCAGAAAGTGGAGG TGTTATTAATGGTGATAAAGCAGAGAGGAAAGGAATAGTAGTTGGTGGAAGGAGAAAATCAGAGAGTGCAGCTTCTTCTGCTCGAAACTCAATGCATAGT ATCAGTGAGATGCCATTGCCAGACAAGAAGCAAAGAAAATCCTCACGTCTTTCCTTCATGGGGTTCAGGAGGAAAAGCACTACTGCTTCTTCAGATATTA GCTTTGATCATGAGGACTATGATGATAATGATGATGATGATGAGCTGAGTGATGTTGTTGATGATGATGATGATGCAAGGCCCGATAGCCTTGACGAAAA AGTAAGAAAGAAAGAAATGAGAAAGGGTATTGATCTTGCTACCACCCTTGAACGTATTGAGAAAAACTTCGTCATTACAGATCCAAGGCTACCCGATAAT CCCATTATCTTTGCCTCTGATAGTTTCTTAGAGTTGACTGAGTACAGCCGCGAAGAAATACTCGGAAGAAATTGTCGATTTTTGCAAGGACCGGAAACTG ATCCCTCCACCGTGAAGAAAATAAGGGATGCAATTAATAACCAGACTGAAGTTACAGTGCAGTTGATTAACTACACCAAAACTGGCAAGAAGTTCTGGAA TCTGTTCCATTTGCAGCCTATGCGCGATCAAAAGGGAGAAGTACAATACTTCATTGGGGTTCAACTGGATGGCAGTGAGCATGTTGAGCCACAGAACAAC TCAATTGCCAAGGATGCTGCAACTGAAGGCGAAAAGCTGGTGAAAGAAACTGCAGAAAATGTTGGTGTTGCAGCCAGGGAGCTTCCGGATGCTAATTTGA AACCAGAAGACTTATGGGCAAATCACTCCAAGGTAGTGTTTCCAAAGCCTCACAGGAAGGATAGTCCTAACTGGATAGCAATTCATAAGATCCAAGTTAG CGGAGAAGAGATCGGGCTAAAGCATTTTAAGCCAGTTAAGCCTCTCGGATCTGGTGACACTGGGAGTGTCCATTTGGTAGAGTTGTGTGGAACTGGCTTG TACTTTGCCATGAAGGCTATGGACAAAAACGTTATGCTGATCCGGAATAAGGTTCATAGAGCTTGTGCAGAGAGAGAAATACTGGACATGTTGGACCACC CTTTTCTTCCTGCCTTATACGCTTCCTTTCAGGACAGTACAGGAATGACCAAATGTTTGTTGGTTGGCGCAGGAGTTATTTACAGGGACTTAAAGCCTGA GAACGTGTTGCTGCAAAGCAATGGCCATATTTCTTTGACGGACTTTGATTTATCATGTTTGACTTCATGCATGCCACAACTGCTGATTCCAAGTGCGAAT GAAAAGAAAAAGAAAAGCAGACAGTCGCAGCAGCAGCAAGATCCAATATTTATGGCTGAACCAATGCGTGCCTCCAATTCTTTTGTGGGGACTGAAGAAT ACATTGCTCCGGAGATTATAACTGCAGCAGGCCATACCAGTGCAGTAGATTGGTGGGCTCTTGGCATTCTTCTCTATGAAATGTTGTATGGATACACCCC TTTCAGAGGCAAGTCAAGACAAAAGACATTCGCCAATATCCTTCACAAAGACCTTAAATTCCCTTCAACTATCCAGGTAAACGTCCATGCGAAGCAGTTA ATGTATAGATTGTTGCATAGAGATCCAAAGAAGAGGCTAGGATCGCGGGAAGGAGCAAATGAAATCAAGAGGCATCCATTCTTCAAAGGCATCAATTGGG CACTGGTTCGTTGTATGGATGCTCCTAAGCTTGAAGCTCCGCTATTATCTGGAAGCGAAGCAGAAAACGAAGCTGCTAAACCCATCGATCCTGAATTAGA AGACCTCCAATCTAATGTTTTCTGA
AA sequence Show only first row Show all	>Lus10018122 pacid=23145262 polypeptide=Lus10018122 locus=Lus10018122.g ID=Lus10018122.BGIv1.0 annot-version=v1.0 MALREPPANSGAGTAAKRAAEWGLVLKTDNETGKPQGVSVRNSGGDEGIKQASGNSRRASGNSVRSSGEYSDDAGNESRGIPRVSEDIKAALSSFQQTFV VSDGTKPDYPILYASEGFFKMTGYTSKEVVGRNCRFLQGADTDPEDVAKIREALESGKSYCGRLLNYKKDGTPFWNLLTITPIKDDNGNVLKFIGMQVEV SKFTEGSKDKSLRPNGLPESLIRYDARQKELAASSVTELVEAVKRPPRPRCESKTKRPVFRKSESGGVINGDKAERKGIVVGGRRKSESAASSARNSMHS ISEMPLPDKKQRKSSRLSFMGFRRKSTTASSDISFDHEDYDDNDDDDELSDVVDDDDDARPDSLDEKVRKKEMRKGIDLATTLERIEKNFVITDPRLPDN PIIFASDSFLELTEYSREEILGRNCRFLQGPETDPSTVKKIRDAINNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSEHVEPQNN SIAKDAATEGEKLVKETAENVGVAARELPDANLKPEDLWANHSKVVFPKPHRKDSPNWIAIHKIQVSGEEIGLKHFKPVKPLGSGDTGSVHLVELCGTGL YFAMKAMDKNVMLIRNKVHRACAEREILDMLDHPFLPALYASFQDSTGMTKCLLVGAGVIYRDLKPENVLLQSNGHISLTDFDLSCLTSCMPQLLIPSAN EKKKKSRQSQQQQDPIFMAEPMRASNSFVGTEEYIAPEIITAAGHTSAVDWWALGILLYEMLYGYTPFRGKSRQKTFANILHKDLKFPSTIQVNVHAKQL MYRLLHRDPKKRLGSREGANEIKRHPFFKGINWALVRCMDAPKLEAPLLSGSEAENEAAKPIDPELEDLQSNVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	0	1
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	2.4	0.9296
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	4.9	0.8999
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	5.0	0.8923
AT4G13550			triglyceride lipases;triglycer...		Lus10004394 [exp]	5.4	0.8498
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	6.9	0.9076
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	7.5	0.8778
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	7.7	0.8824
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10000322 [exp]	8.1	0.8590
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	8.5	0.8754
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	9.4	0.8692

Compare expression of checked genes

Lus10018122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.