Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41460 582 / 0 Protein of unknown function (DUF604) (.1) AT4G23490 582 / 0 Protein of unknown function (DUF604) (.1) AT4G11350 576 / 0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G07850 571 / 0 Protein of unknown function (DUF604) (.1) AT1G01570 500 / 2e-174 Protein of unknown function (DUF604) (.1) AT4G00300 468 / 1e-157 fringe-related protein (.1.2) AT2G37730 381 / 6e-127 Protein of unknown function (DUF604) (.1) AT1G33250 373 / 1e-123 Protein of unknown function (DUF604) (.1) AT4G15240 342 / 2e-112 Protein of unknown function (DUF604) (.1) AT1G05280 334 / 1e-109 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017514 [exp] 603 / 0 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 590 / 0 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 484 / 3e-167 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10008293 [exp] 380 / 2e-126 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10024662 [exp] 366 / 6e-125 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 369 / 7e-123 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10036142 [exp] 355 / 1e-120 AT1G07850 234 / 5e-74 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 350 / 1e-115 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10033262 [exp] 345 / 1e-114 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026300 [exp] 706 / 0 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 589 / 0 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 587 / 0 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 502 / 6e-175 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 394 / 7e-132 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 385 / 1e-128 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 382 / 2e-128 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 376 / 2e-125 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 369 / 3e-122 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 348 / 1e-114 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10018123 pacid=23145230 polypeptide=Lus10018123 locus=Lus10018123.g ID=Lus10018123.BGIv1.0 annot-version=v1.0 ATGCAGTTAGCATCTAGGTTCAGGAAGTATCTGATATGGTCCCTCAGCGTCACACTAATGCTTTACCTCCTCTACTATTTCACCTTCATCTACTCCACAA CGACTGTCATTCGCCGTTGCATCTCCCTCGAAGAACATTACGATATCATTCGAAACATCTCATCCTCCCAATCCAACAACATTAGCAATAATATTAATAC TTCTTCTCCTCCTACTAATTCCTCCCCACCCTACGAGAGTCCTCAATATGCCTCCCCACCATACGAAAGCCCTCCTCCATCGAATGGCACACACCCAAGA TCATCATCGTCATCAATTGGGTACGGGACAGAGCTGAAGCACCTGGTGTTCGGGGTTGCCGCATCGGCGGATCTATGGGAAACAAGGAAAGAATACGTCA AAGTATGGTGGAGGTTGAGAAACACCAGGGCCATAGTTTGGATGGACAGGCCTGTTGTTGCTAACTCCTCCTCCGAGGGGCTTCCTGAAATCAAGATTTC AGGGGATACATCCGAATTCAAGTACTCTAACAGACAAGGCCACCGATCAGCTCTGAGGATCTCCAGGGTGGTTTCTGAGACGCTCAAGCTTGGATTGAAG GACGTCAGGTGGTTTGTGATGGGAGACGACGACACTGTATTCGTACCGGAGAATGTTGCCCGGATACTCGACAAGTACAACCACAGAGAGTATTATTACG TGGGGAGCTCGTCGGAGAGCCACATCCAGAACATTTACTTCTCCTACAACATGGCTTACGGGGGAGGAGGATTTGCCATTAGCTACCCTCTGGCGTTGGA GCTGGCTAAGGTTCAGGATAAGTGCATTCAACGCTATCCAGGATTGTACGGAAGTGATGACAGGATCCATGCTTGTATGGCTGAGCTTGGGGTTCCCCTC ACCAAGGAACCTGGATTTCATCAGTATGATGTATATGGAGAGCTATTAGGGCTTCTGGCAGCTCATCCAGTGGCACCATTAGCATCTCTTCATCACCTTG ATATAGTGGAGCCTATATTCCCAGGGAAGAACAGAGTTGATGCTCTACACCAGCTATTCCAATCTGTAAGGGTTGATTCAGCTAGTGTGATTCAGCAATC CGTATGCTATGACAGGGACAGGTACTGGTCCATCTCGGTTTCCTGGGGGTATGCTGTTCAAGTGTGGAGAGGGGTGATATCTCCTAGGGAGCTTGAGGTT CCAACTAGAACATTCCAAAACTGGTACAGGAGAGCAGACTACACTGCTTATTCATTCAACACTAGGCCTGTCACTAAGCACCCTTGTCTCCAGCCTTTTG TTTTCTACATGAGCACCACTAGACTCAATCGATCAAGAAACAAGACCCTCGGGGTCTACTACCGTCACAAAGCACCCTCCCCTTATTGCCGCTGGAAAAT GGCTTCCCCTGAAAAGATTAACTCCATCGTTGTCATCAAGAGGCCTGACCATCAAAGATGGAAAAAGTCACCAAGGAGGGATTGTTGCAGAGTTTTGCCA ACTAACAGAACGGAGAGTATGTACGTATGGGTGGGAAGTTGCCCTACAGGTGAGATCAGTGAGTTGGACAAGAAATGA
AA sequence Show only first row Show all	>Lus10018123 pacid=23145230 polypeptide=Lus10018123 locus=Lus10018123.g ID=Lus10018123.BGIv1.0 annot-version=v1.0 MQLASRFRKYLIWSLSVTLMLYLLYYFTFIYSTTTVIRRCISLEEHYDIIRNISSSQSNNISNNINTSSPPTNSSPPYESPQYASPPYESPPPSNGTHPR SSSSSIGYGTELKHLVFGVAASADLWETRKEYVKVWWRLRNTRAIVWMDRPVVANSSSEGLPEIKISGDTSEFKYSNRQGHRSALRISRVVSETLKLGLK DVRWFVMGDDDTVFVPENVARILDKYNHREYYYVGSSSESHIQNIYFSYNMAYGGGGFAISYPLALELAKVQDKCIQRYPGLYGSDDRIHACMAELGVPL TKEPGFHQYDVYGELLGLLAAHPVAPLASLHHLDIVEPIFPGKNRVDALHQLFQSVRVDSASVIQQSVCYDRDRYWSISVSWGYAVQVWRGVISPRELEV PTRTFQNWYRRADYTAYSFNTRPVTKHPCLQPFVFYMSTTRLNRSRNKTLGVYYRHKAPSPYCRWKMASPEKINSIVVIKRPDHQRWKKSPRRDCCRVLP TNRTESMYVWVGSCPTGEISELDKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41460			Protein of unknown function (D...		Lus10018123 [exp]	0	1
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Lus10036811 [exp]	1.7	0.9687
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	2.0	0.9671
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10007645 [exp]	2.8	0.9628
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	4.2	0.9525
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	10.3	0.9739
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	17.7	0.9698
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10002776 [exp]	27.6	0.8662
					Lus10026149 [exp]	29.2	0.9665
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	29.8	0.9632
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10043023 [exp]	31.2	0.8712

Compare expression of checked genes

Lus10018123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.