Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45630 426 / 2e-133 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G60170 400 / 6e-124 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT2G28540 392 / 1e-121 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT1G74870 65 / 4e-11 RING/U-box superfamily protein (.1) AT3G48070 65 / 8e-11 RING/U-box superfamily protein (.1.2) AT5G62910 65 / 8e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036140 [exp] 1593 / 0 AT5G60170 491 / 7e-158 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018126 [exp] 1511 / 0 AT3G45630 774 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10036138 [exp] 1463 / 0 AT5G60170 745 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10042156 [exp] 63 / 4e-10 AT5G62910 218 / 1e-68 RING/U-box superfamily protein (.1) Lus10004246 [exp] 63 / 6e-10 AT5G62910 215 / 2e-67 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026200 [exp] 481 / 1e-153 AT3G45630 812 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G132300 [exp] 374 / 3e-114 AT3G45630 437 / 8e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G084700 [exp] 369 / 3e-112 AT2G28540 446 / 1e-141 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G074500 [exp] 61 / 2e-09 AT3G48070 204 / 3e-63 RING/U-box superfamily protein (.1.2) Potri.015G069400 [exp] 60 / 4e-09 AT3G48070 199 / 2e-61 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018125 pacid=23145182 polypeptide=Lus10018125 locus=Lus10018125.g ID=Lus10018125.BGIv1.0 annot-version=v1.0 ATGAGCGACCAGGGGGACAAGACCTGCCCACTTTGCGCTGAGGAGATGGATCTGACTGATCAGCAATTGAAGCCTTGCAAATGTGGTTATGAGATATGTG TTTGGTGTTGGCATCACATAATGGACATGGCTGAGAAGGATGCCTCTGAGGGCCGGTGTCCTGCATGCCGCACTCCATATGACAAGGAAAAGATAGTAGG GACAGGACCAAATGAGAGGTTGGTATCTGAAATCAATGAGCGGAAGAAGACACAGAAGTCAAAGATGAAAGCCTCAGAGGGGAGGAAGCAGCTTAGCAGT GTGCGAGTTATCCAACGGAATCTTGTGTATATAGTTGGGCTACCGATGAACTTTGCAGATGAGGATCTTCTCCAGCGCAGGGAATATTTTGCCCAGTATG GTAAAGTCTTGAAGGTATCAATGTCGCGGACAGCTACTGGAGTTGTTCAACAGTTTCCTAATAATACATGTAGTGTGGCATGTTTTGGAACCACAAAGTA TTGTCATGCTTGGCTGAGAAATGTGCCCTGCACCAATTCCGATTGTCTATACTTGCATGAGGTTGGATCTCAAGAAGATAGTTTTACAAAAGATGAGATT GTATCAGCGTATACAAGGAATATGGTACAACAGATTACTTGTGGCGCCAGTAGTTTGGCCTGCCGTTCTGGGAGTATGTTGCCGCCTCCAGCACTAGATT ATTCTTATGACACTTCAGCCTCTGCCCTCGTCAAAAATTCAACAAATAGCACAGTGGGTGCTAGTTGCAAAGGCTTGCCTTCTAAGGGGAGCTGTAGTAG ATCTGCTGCACTTCCAGCTGCAGCCTCATGGGGAATGCGTGCTTCAAACCATCAGCCGATTGTAACATCCTTAAATGGTCCTTCCAAGACCAAGCCAATG GCTGATACAGTTTCCAGCACTGTTCAGGTTCCAGCGGCTGTTGCACCCACAGTTCAGTCTTCTGCAGCAGTTGGTGATATAAAGGCAACTTCGAATGAAG ATGGTCAACCAATAAACAGTAAAGGCAGACCTGATTCCTTAAAACCTATTAAACACCATGGCATAGGAGGTTCATGTACAAAGAGTTCTCAGCTATTTAG TCGTGAACAAGAGGGAGTTTCTATTGCTGATGAGAAACCATCAAGTTTTTGTCCTGCAATGTCTTCGGAGAGGAGGACAAATAGTGGTGCCAGAAGTGAG GCATCTATGGCAATGACTAGAACTAGCAGCATGTCTCCAGAGGATAGCGCAATCAAATCCTCTAGTGGTCAGATACGTGTAGATCGATCTGGGCAGTCTC TAGGTTCTACAGCCTGTAAGCCTGCCGCCAATGGTGTATTTGTTTCAGGAGAAGTTAAAGATTCTGAAATGGATCTGCAGACTAAAGCTATTTCAAGCAG TGTTTCCGAGCTGGAAGAGGATTTATTATCGTTTGATAATCAGAGACTGAGCGATCCAGAGATAGTCAGCCGTACATCGTATTTGCCAAGTACAATGAAC TCTTTACAGACAGCTGATGATTCTTGGTCAATTCCGTTGCAGCATAGTGATGCATTAGATGTAAAGGGTGATCCTCTGTTTGTAGATAGTAGAAATGGTG ATCGTCTGGTGCGAAATGTGTCATGTGATGCTGTCATGCTAAATGGATATCCTGAGAAATTGACAAATAATAGCTCTACTGTGGTGGATAGAACTGGACA ACACCGATTTGTGCTTCCTGCCCAAAGTGAAGGAAAACATTCGGGAATACTGCAATGTGAAAGTGATGGTAATGCTGATCTAGATGCTGGAGAGAGTAGT ATAATTTCAAATATACTATCTCTAGACCTGGATGGATGGGATGAGTCGTTAACTTCTCCTCAAAATTTGGCTAAACTTTTGGGCGATACAGGAAAACAAA CTAGTTCTCTGAATATGTCCAATTCCTGGAAAGCTCAAAGTAACAAGCAGTCTAAGTTCTCTTTTGCTAGGCAGCCGGAGTCTATGAATCATGGAACTGA TGCTGATAATTCCTTTATTGGGTTGGGACAGATGCCAAGGAATCATTCGTTTAATCATGATCTCTTGGAAAACAGAAATGCTTATATGGATAAGCATGGA CCGAGTAATGGTTTCTCGACAAGTATTGTGGATGAACCAAATAACTTTCTGGGTGGTATTCCAGCTTACCCATCGGGTAATGCTTCAGGTCCCCGAACTC AAATATCTGCACCCCCAGGGTTCACTGTGCCTAACAGAGCACCACCCCCAGGCTTCTCGTCTCACGAACGAACGGACCATACCTTTGATTCCATGTTAGG AAGTCAGTTGCTGGGCATACCTTCGTTGCACAGAAGCTCATACCATGCTCCTCCAGTGACTGGAAGCACAGTAGACATTGAACTAATTGATCCTGCAATT ATGGCTGTTGGTAAGGGGAGATTGCAAGGGGGGTTTAGTAATGGTAACCACCCAGGTTTAGACTTGAGATCAAATTTCCAACAACAATTGGGAATGATTG AGAATGAAGCCAGACTTCAACTACTCATGCAGAGATCTCAACAACAACAGCAACAGCAGAACCTACGGTATGCTGCTGATCTTGGGGGTAGCTTTTCTAC TGCCCCTGAATCTTACGGCATTTCTTCAAGGATGGCTGATCAGCTGCAAATGAACAGTAATCAGTTTGCCTTTGCAAAACTCTCCCACTCACAGTCTAGG AACGGAGTTGTGTCAAATGGATATTGGGATAATCATAATACTAGTTGGAATGAAGTTCCGGGTGGGAACAGTATGGGTATGGCAGAGCTACTAAGGAATG AGAGACTGGGGGGGTTGAACAGTTTTTACACTGCAGGTTATGATGATTCTAAATATCGGATGCCAAGTTCGGGTGACTTTTACAACAGGACATTTGAGAT GTGA
AA sequence Show only first row Show all	>Lus10018125 pacid=23145182 polypeptide=Lus10018125 locus=Lus10018125.g ID=Lus10018125.BGIv1.0 annot-version=v1.0 MSDQGDKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDASEGRCPACRTPYDKEKIVGTGPNERLVSEINERKKTQKSKMKASEGRKQLSS VRVIQRNLVYIVGLPMNFADEDLLQRREYFAQYGKVLKVSMSRTATGVVQQFPNNTCSVACFGTTKYCHAWLRNVPCTNSDCLYLHEVGSQEDSFTKDEI VSAYTRNMVQQITCGASSLACRSGSMLPPPALDYSYDTSASALVKNSTNSTVGASCKGLPSKGSCSRSAALPAAASWGMRASNHQPIVTSLNGPSKTKPM ADTVSSTVQVPAAVAPTVQSSAAVGDIKATSNEDGQPINSKGRPDSLKPIKHHGIGGSCTKSSQLFSREQEGVSIADEKPSSFCPAMSSERRTNSGARSE ASMAMTRTSSMSPEDSAIKSSSGQIRVDRSGQSLGSTACKPAANGVFVSGEVKDSEMDLQTKAISSSVSELEEDLLSFDNQRLSDPEIVSRTSYLPSTMN SLQTADDSWSIPLQHSDALDVKGDPLFVDSRNGDRLVRNVSCDAVMLNGYPEKLTNNSSTVVDRTGQHRFVLPAQSEGKHSGILQCESDGNADLDAGESS IISNILSLDLDGWDESLTSPQNLAKLLGDTGKQTSSLNMSNSWKAQSNKQSKFSFARQPESMNHGTDADNSFIGLGQMPRNHSFNHDLLENRNAYMDKHG PSNGFSTSIVDEPNNFLGGIPAYPSGNASGPRTQISAPPGFTVPNRAPPPGFSSHERTDHTFDSMLGSQLLGIPSLHRSSYHAPPVTGSTVDIELIDPAI MAVGKGRLQGGFSNGNHPGLDLRSNFQQQLGMIENEARLQLLMQRSQQQQQQQNLRYAADLGGSFSTAPESYGISSRMADQLQMNSNQFAFAKLSHSQSR NGVVSNGYWDNHNTSWNEVPGGNSMGMAELLRNERLGGLNSFYTAGYDDSKYRMPSSGDFYNRTFEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	0	1
AT4G10930			unknown protein		Lus10023068 [exp]	2.0	0.9157
AT2G19710			Regulator of Vps4 activity in ...		Lus10000978 [exp]	2.4	0.9017
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	3.2	0.9024
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	3.2	0.9257
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	4.0	0.8985
AT4G08540			DNA-directed RNA polymerase II...		Lus10020601 [exp]	4.0	0.8881
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	6.0	0.9037
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10026448 [exp]	6.9	0.8629
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10009487 [exp]	7.2	0.8603
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	7.2	0.9034

Compare expression of checked genes

Lus10018125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.