Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45630 751 / 0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G28540 577 / 0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT5G60170 473 / 9e-151 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT3G48070 66 / 5e-11 RING/U-box superfamily protein (.1.2) AT1G74870 65 / 5e-11 RING/U-box superfamily protein (.1) AT5G62910 66 / 6e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036138 [exp] 1841 / 0 AT5G60170 745 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036140 [exp] 1643 / 0 AT5G60170 491 / 7e-158 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018125 [exp] 1611 / 0 AT3G45630 504 / 1e-163 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10042156 [exp] 64 / 2e-10 AT5G62910 218 / 1e-68 RING/U-box superfamily protein (.1) Lus10004246 [exp] 64 / 3e-10 AT5G62910 215 / 2e-67 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026200 [exp] 1005 / 0 AT3G45630 812 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G084700 [exp] 625 / 0 AT2G28540 446 / 1e-141 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G132300 [exp] 587 / 0 AT3G45630 437 / 8e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G074500 [exp] 62 / 1e-09 AT3G48070 204 / 3e-63 RING/U-box superfamily protein (.1.2) Potri.015G069400 [exp] 61 / 2e-09 AT3G48070 199 / 2e-61 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10018126 pacid=23145223 polypeptide=Lus10018126 locus=Lus10018126.g ID=Lus10018126.BGIv1.0 annot-version=v1.0 ATGAGCGATCAGGGAGACAAGACCTGCCCGCTTTGTGCCGAGGAGATGGATCTGACTGATCAGCAATTGAAGCCTTGCAAATGTGGCTACGAGATATGTG TCTGGTGTTGGCATCACATACTGGACATGGCTGAGAAGGATGCCTCAGAGGGACGTTGTCCAGCATGCCGAACTCCATATGACAAAGAGAAGATAGTTGG GACTGGGCCAAATGAGAGATTGGTATCCGAAATCAATGAGCGTAAGAAGTCACAGAAGTCAAAGACGAAACCCTCCGAGGGGAGGAAGCAGCTCAGCAGT GTGCGAGTTATCCAACGGAATCTTGTGTATATAGTTGGGCTACCTTTGAACTTTGCAGATGAGGATCTTCTCCAGCGAAGGGAATATTTTGGCCAGTATG GAAAAGTCTTGAAGGTATCGATGTCACGGACAGCAACTGGAGTTGTTCAGCAGTTTCCTAATAATACTTGTAGTGTATATATTACTTATGGAAAGGAGGA CGAAGCAATTCGCTGCATTCAGTCTGTACATGGCTTTGTCTTGGATGGTAGATCATTGAAGGCATGCTTTGGAACTACAAAGTATTGTCATGCTTGGCTG AGAAATATGCCCTGCACCAATTCTGATTGTCTATACTTGCATGAGGTTGGATCTCAAAAAGATAGTTTCACAAAAGATGAGATCGTGTCAGCGTATACAA GGAGTAGGGTGCAACAGATTACTGCTGCAACCAGTAATTTGGCCCGACGTTCTGGGAGTATGTTGCCACCTCCAGCTCTTGATTATTCTCATGACACCTC AGCCTCTGCCGTCATGAAAAGTTCAACAAATAGCACTGTTGGTGCTAGTTGCAAAGGCTCACCTCCTAATGGGAGTTGTAGTAGATCGGGTGCTCTTCCA GCTGCAGCCTCATGGGGAATGCGTGCTTCAAACCAGCCATCCAAGCCAAAGCCAATGGCTGATACAGTTGTAAGCACTGTTGGGCTTCCAGAGGCAACGA TTCAGTCTTCTGCAGCAGTTGGTGATATGAAGGCAACTTGGATTCAAGATGGTCATTCAATAAACAGTAAAGCCAAACCTGATTTGGTAAGACCTATTAA ACAGCATGGCAGAGGAGATCCCTGTCCCATCATGTCTGAGAAGGCTTCTATAAATGACAGTAGTGATAGTACTGAATTACCTAAAGACTGGGAAACAGCA GATGTTTCAAGCGTGAAGAATTCTCAGCCATTTAGTCACGATCAAGAGGGGCTTTCAATTGCTGATGAGACACTTTCAAGTTTATTTCCTGAAGTGTCTT CAGTGTGGAGGATAGATAGTGGTGCCAGAAGTGAGACATCTATGGCAATGACTACAAGTGGCAGCATTCTTTCAGAGGATAATGCAGTCAAATCACATAA TGGTCAGAAACATGTTGATCAGTATTGTCAGTCTGTAGCTTCTACAGCCTGTAAGCCTGCCGCCAATGGTGTATTTATTTCAAGAGAAGTAAAAGATTCG AGAATGGAACTGCAGACTCAAGCTATTTCAAGCAGTGTTTGTGAGCTGGAAGAGGATTTATTATCGTTTGATAATCAGAGACTGAGCGATCCTGAGGTGG TCAGCCGTACATCATATTTGCCAAGTACAGTGAACTCTGTACAGACAGCTGATGATTCTTGGTCAACTCCATTGCAGCATAGTGATGCTTTAGATGTAAG GGGTGATCCTTTATTTCTAGATAGTAGAAATGGTGATCGTCTGATGAGAAATATGTCGTGTGATGCTATCATGCGAAATGGATACCCTGAGAAATTGACA AATAATAGCTCTACTGTATTGGATAGAACTGGAGAACACCGATTTGTGCTTCCTGGCCAAGGTGAAGGGAAACATTGGGGAATACTACAATGTGAAAGTG ATGGTAATGCAGATGCTGGTGAGAGTTGTATAATTTCAGATATACTATCTCTAGACCTGGATGCATGGGATGAGTCGTTAAATTCTCCTCAAAACTTAGC TAAACTTTTGGGCGATACAGGCAAACAAACTAGTTCTCTGAAGATGTCCAATTCCTGGAAAGTTCAAAGTAACAAGCAGTCTAAGTTCTCCTTTGCTAGG CAGCCGGAGTCTATGAATCATGGAATTGATTCCGATAATTCCTTTATTGGGTTGGGACAGATGCCAAGGAATCATCCGTTTAATCATGATCTCTTGGAAA ACAGAAATGCTTATATGGATAAGCATGGACCGAGTAATGGTTTCTCGACAAGTATTGTCGATGAACCAAATAACTTTCTGGGTGGCATTCCAGCTTTCGC ATCTAGTAATGCTTCAGGTCCCCGAACTCAAATATTGGCACCCCCAGGGTTTACTGTGCCTAACAGAGCACCACCCCCAGGCTTCTCTTGTCACGAAAGA ACGGATCATACCTTTGATTCCATGTTAGGAAGTCAGTTGCTGGACACACCTTCGTTGCACAGAAGTTCATACCATGTCCCTCAAGTGACTGCAAGCACAG GAAGCACAGTAGACATTGAATTAATTGATCCTGCAATTTTCGCCGTTGGTAAGGGGAGATTGCAAGGGGGGCTTAATAGTAGTAACCACCCAGGTTTAGA CTTAAGATCAAATTTCCAACAACAATTGGGAATGTTTGAGAATGAAGCCAGACTTCAACTACTCATGCAGAGATCTCAGCAACAGCAACAGCAGAACCTA CGGTACGCTGCTGATCTTGGGGGTAGCTTTTCTACTGCGCCTGAATCTTACAGCATTTCTTCAAGGATAGCTGATCAGTTGCAAATGAACAATAATCTGT CTGCCTTTGCAAAACTCTCCCACTCACAGTCTAGGAACGGAGTTGTGTCAAATGGATATTGGGATAATCATAATACTAGTTGGAATGAAGTTCCGGGTGG GAACATAATGGGTATGGCAGAGCTACTAAGGAACGAGAGACTGGGGGGGTTGAACAGTTTTTACACTGCAGGTTATGATGATTCTAAATATCGGATGCCG AGTTCGGGTGACTTTTACAACAGGACATTTGAGATGTGA
AA sequence Show only first row Show all	>Lus10018126 pacid=23145223 polypeptide=Lus10018126 locus=Lus10018126.g ID=Lus10018126.BGIv1.0 annot-version=v1.0 MSDQGDKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILDMAEKDASEGRCPACRTPYDKEKIVGTGPNERLVSEINERKKSQKSKTKPSEGRKQLSS VRVIQRNLVYIVGLPLNFADEDLLQRREYFGQYGKVLKVSMSRTATGVVQQFPNNTCSVYITYGKEDEAIRCIQSVHGFVLDGRSLKACFGTTKYCHAWL RNMPCTNSDCLYLHEVGSQKDSFTKDEIVSAYTRSRVQQITAATSNLARRSGSMLPPPALDYSHDTSASAVMKSSTNSTVGASCKGSPPNGSCSRSGALP AAASWGMRASNQPSKPKPMADTVVSTVGLPEATIQSSAAVGDMKATWIQDGHSINSKAKPDLVRPIKQHGRGDPCPIMSEKASINDSSDSTELPKDWETA DVSSVKNSQPFSHDQEGLSIADETLSSLFPEVSSVWRIDSGARSETSMAMTTSGSILSEDNAVKSHNGQKHVDQYCQSVASTACKPAANGVFISREVKDS RMELQTQAISSSVCELEEDLLSFDNQRLSDPEVVSRTSYLPSTVNSVQTADDSWSTPLQHSDALDVRGDPLFLDSRNGDRLMRNMSCDAIMRNGYPEKLT NNSSTVLDRTGEHRFVLPGQGEGKHWGILQCESDGNADAGESCIISDILSLDLDAWDESLNSPQNLAKLLGDTGKQTSSLKMSNSWKVQSNKQSKFSFAR QPESMNHGIDSDNSFIGLGQMPRNHPFNHDLLENRNAYMDKHGPSNGFSTSIVDEPNNFLGGIPAFASSNASGPRTQILAPPGFTVPNRAPPPGFSCHER TDHTFDSMLGSQLLDTPSLHRSSYHVPQVTASTGSTVDIELIDPAIFAVGKGRLQGGLNSSNHPGLDLRSNFQQQLGMFENEARLQLLMQRSQQQQQQNL RYAADLGGSFSTAPESYSISSRIADQLQMNNNLSAFAKLSHSQSRNGVVSNGYWDNHNTSWNEVPGGNIMGMAELLRNERLGGLNSFYTAGYDDSKYRMP SSGDFYNRTFEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	0	1
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	2.8	0.8966
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	3.0	0.9137
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	3.5	0.9007
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	4.9	0.8873
AT3G61960			Protein kinase superfamily pro...		Lus10005135 [exp]	5.5	0.8898
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	5.7	0.8912
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	5.7	0.9127
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	6.9	0.8923
AT5G13950			unknown protein		Lus10031980 [exp]	7.6	0.8604
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	10.5	0.8926

Compare expression of checked genes

Lus10018126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.