Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45640 653 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT2G43790 587 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT4G01370 536 / 0 ATMPK4 MAP kinase 4 (.1) AT4G11330 520 / 0 ATMPK5 MAP kinase 5 (.1) AT3G59790 513 / 0 ATMPK10 MAP kinase 10 (.1) AT1G07880 511 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT1G01560 500 / 3e-178 ATMPK11 MAP kinase 11 (.1.2) AT2G46070 489 / 3e-174 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G10210 419 / 2e-146 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT2G18170 413 / 3e-144 ATMPK7 MAP kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036136 [exp] 772 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10023339 [exp] 606 / 0 AT3G45640 565 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10027091 [exp] 603 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 603 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10038472 [exp] 583 / 0 AT3G45640 535 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10007921 [exp] 534 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 520 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 519 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 518 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066100 [exp] 681 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 666 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.007G139800 [exp] 603 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 596 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.002G162500 [exp] 531 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 526 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.003G131800 [exp] 525 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 520 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.005G231100 [exp] 436 / 7e-153 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 434 / 2e-152 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018127 pacid=23145218 polypeptide=Lus10018127 locus=Lus10018127.g ID=Lus10018127.BGIv1.0 annot-version=v1.0 ATGGCAGGAGGTTATGCCCAGAACAATGGAACCGGCGGTCAGTACCCCGATTTCCCTGCGATTCCTGTTCACGGCGGTCAGTTTGTTCAGTATAACATAT TCGGGAATCAATTTGAGATCACCCCGAAGTATAGGCCTCCGATTATGCCCATCGGCCGCGGCGCTTACGGCATCGTCTGCTCGGTATTGAACTCGGAGAC GAACGAGATGGTGGCGATGAAGAAGATAGCCAATGCTTTTGACAACCACATGGACGCCAAACGCACTCTCCGCGAGATTAAGCTTCTCCGCCACCTGGAT CACGAGAACGTGATTGCAATCAGAGATGTGGTTCCTCCACCGTTGAGGAGAGAGTTTACAGATGTCTACATGGCAACTGAGCTAATGGACACAGATCTAC ACCAGATCATCCGTTCCAATCAGGGTTTATCGGAGGAGCACTGTCAGTATTTCATGTACCAGCTACTTCGAGGATTGAAGTACATACACTCTGCTCATGT AATCCACAGGGACTTGAAGCCCAGCAATCTTCTGTTGAATGCAAATTGTGACTTGAAGATCTGTGATTTCGGTCTGGCTAGGCCTGCGTTGGAGAACGAG TTCATGACAGAATATGTTGTTACAAGATGGTACAGGGCGCCTGAGCTTCTGCTCAACTCTCAGGATTACACTGCAGCTATTGATGTGTGGTCTGTTGGTT GTATCTTTATGGAGCTCATGAATCGTAAGCCATTGTTTCCAGGCAAAGACCAAGTCCACCAGATGAGGTTGTTGACAGAGCTTCTTGGCACACCAACTGA ATCGGATCTTGGGTTTGTAAGGAACGAGGATGCTAGAAAATATATCAGGCAGCTCAGTCCACAGCCTCGACAGTCATTAGCCAAACTTTTCCCTCATGTT CATCCCCTGGCCATTGATCTTGTGGATAAAATGCTGGCATTTGATCCAGCGAAAAGAATAACTGTTGAGGAAGCATTAGCACACCCGTATCTGGAACGGT TACATGACATAGCAGATGAACCAGTTTGTCAAGAGTCATTCTCTTTTGATTTTGAGCAACAAGTACTGAGTGAAGAACAGATGAAAGAGATGATATACAG GGAGGCATTGTCATTCAATCCAGAGTATGCATAA
AA sequence Show only first row Show all	>Lus10018127 pacid=23145218 polypeptide=Lus10018127 locus=Lus10018127.g ID=Lus10018127.BGIv1.0 annot-version=v1.0 MAGGYAQNNGTGGQYPDFPAIPVHGGQFVQYNIFGNQFEITPKYRPPIMPIGRGAYGIVCSVLNSETNEMVAMKKIANAFDNHMDAKRTLREIKLLRHLD HENVIAIRDVVPPPLRREFTDVYMATELMDTDLHQIIRSNQGLSEEHCQYFMYQLLRGLKYIHSAHVIHRDLKPSNLLLNANCDLKICDFGLARPALENE FMTEYVVTRWYRAPELLLNSQDYTAAIDVWSVGCIFMELMNRKPLFPGKDQVHQMRLLTELLGTPTESDLGFVRNEDARKYIRQLSPQPRQSLAKLFPHV HPLAIDLVDKMLAFDPAKRITVEEALAHPYLERLHDIADEPVCQESFSFDFEQQVLSEEQMKEMIYREALSFNPEYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	0	1
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	1.4	0.9073
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	1.4	0.9010
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	3.3	0.8715
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	5.0	0.8910
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	5.5	0.8717
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	6.0	0.8831
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	6.9	0.8918
					Lus10025204 [exp]	7.7	0.8926
AT3G23910			unknown protein		Lus10022568 [exp]	8.5	0.7977
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	8.9	0.8628

Compare expression of checked genes

Lus10018127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.