Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07630 452 / 8e-159 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) AT1G08250 390 / 1e-133 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 383 / 1e-130 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT1G11790 379 / 1e-129 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT3G44720 361 / 5e-122 ADT4 arogenate dehydratase 4 (.1) AT5G22630 344 / 2e-115 ADT5 arogenate dehydratase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036135 [exp] 621 / 0 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10043369 [exp] 392 / 6e-134 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10019526 [exp] 391 / 1e-133 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10020549 [exp] 385 / 2e-131 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 384 / 4e-131 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10031547 [exp] 365 / 3e-124 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10015130 [exp] 364 / 5e-124 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10015561 [exp] 348 / 9e-118 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020035 [exp] 334 / 2e-112 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G195500 [exp] 488 / 1e-172 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Potri.011G004700 [exp] 402 / 1e-138 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 386 / 2e-132 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G188100 [exp] 387 / 3e-132 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 386 / 8e-132 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10018128 pacid=23145263 polypeptide=Lus10018128 locus=Lus10018128.g ID=Lus10018128.BGIv1.0 annot-version=v1.0 ATGGCAGCATTCGTGACGCGATCCCTAACTGCGCCGCTCCCCGGCCAAATCTCCGTTAAAACCTCGCGCTCTGATCAATCGGCGACGGTGCTGGTTTCTA TAAGACGGCGCTCATGTGTGTCAGTCCGGTCCTCTGTCCGCGGGAACACCAATAACTTTTACGAGGGTAAGAATGATACTCGAGCGTTGGAGTTGAAGGT TGATGATTCTGCCGCTGCCGCTGCATGCGATGCTCTCACCACGGATTCCCTTCCTAGTAGGGATTTAAAGACTTGGAATTTTTGCTTCTGTTTTAATTTA ATTGTTGACTTGCTGTATCCAACAGGGCCTTTGACGTCGGCTCGAGTGTCTGATTCGGGCTCAGGTGGTTCTCGATTGCGAGTTGCATATCAGGGGGTTT CTGGAGCATATAGCGAGTCTGCTGCACAAAAGGCATATTCGAACTGTGAGGCTGTACCTTGTGATCAATTTGAAACTGCTTTTGAAGCTGTTGAGGGGTG GACTGTTGCAAGAGCATTCTTACCTATTGAAAACTCTTTGGGTGGGAGTATCCACACTTTAGGTGGGAGTATCCACAGAAATTATGACCTCTTGCTCCGT CACAGGCTACATATCGTTGGAGAGATTAAATATGCTGTTCGCCATTGCTTGCTAGCTAATAAAGGTGTTAAAATTGAAGACTTGAAGAGGGTTCTGAGTC ATCCCCAGGCTCTTGCTCAATGTGAATATACGTTGATGCAATTGGGATTGGTTAGAGAAGCAGTGGATGATACTGCTGGTGCAGCGAAGTATGTTGCACT CAGCAAATTGAAGGACACTGGAGCTGTTGCCAGTTCTGCTGCTGCTGCAATCTACGGCTTAGATATATTAGAAGAAGACATTCAGGATGACTCGGACAAT GTTACAAGATTTCTGATGTTGGCGAGAGAACCCATAATTCCGGGCACTGACCGTCCTTTTAAGACAAGTATAGTGTTCTCGCTGGAGGAGGGCCCTGGAA TTCTTTTCAAGGCTCTTGCAGTTTTTGCTCTGAGGCAAATCAACCTAACCAAAATCGAGAGCCGTCCTTGGAAGCGGAAGTCTCCTAGAGCTCCTGGAGA TAACGACAATGGACTTCAAAAATGCTTCCACTATCTTTTCTATGTGGATTTTGAGGCGTCAATGGCTAGTGATAACGCTCAGAATGCCTTGAAGCATCTG AACGAGTTTGCAACATTCTTGCGAGTTTTAGGAAGTTATCCAGCTGATAATAGCATGATATGA
AA sequence Show only first row Show all	>Lus10018128 pacid=23145263 polypeptide=Lus10018128 locus=Lus10018128.g ID=Lus10018128.BGIv1.0 annot-version=v1.0 MAAFVTRSLTAPLPGQISVKTSRSDQSATVLVSIRRRSCVSVRSSVRGNTNNFYEGKNDTRALELKVDDSAAAAACDALTTDSLPSRDLKTWNFCFCFNL IVDLLYPTGPLTSARVSDSGSGGSRLRVAYQGVSGAYSESAAQKAYSNCEAVPCDQFETAFEAVEGWTVARAFLPIENSLGGSIHTLGGSIHRNYDLLLR HRLHIVGEIKYAVRHCLLANKGVKIEDLKRVLSHPQALAQCEYTLMQLGLVREAVDDTAGAAKYVALSKLKDTGAVASSAAAAIYGLDILEEDIQDDSDN VTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPWKRKSPRAPGDNDNGLQKCFHYLFYVDFEASMASDNAQNALKHL NEFATFLRVLGSYPADNSMI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10018128 [exp]	0	1
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	12.6	0.8162
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	13.1	0.8063
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	14.5	0.8108
AT2G46900			unknown protein		Lus10036338 [exp]	22.4	0.7881
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Lus10041739 [exp]	24.7	0.8064
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	38.3	0.7734
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	39.5	0.7923
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	46.0	0.7833
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	47.1	0.7538
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10002762 [exp]	47.9	0.7441

Compare expression of checked genes

Lus10018128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.