Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28520 1295 / 0 VHA-A1 vacuolar proton ATPase A1 (.1) AT4G39080 1035 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G21410 1028 / 0 VHA-A2 vacuolar proton ATPase A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036133 [exp] 1586 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10024304 [exp] 1069 / 0 AT4G39080 1288 / 0.0 vacuolar proton ATPase A3 (.1) Lus10002104 [exp] 1023 / 0 AT4G39080 1226 / 0.0 vacuolar proton ATPase A3 (.1) Lus10017490 [exp] 994 / 0 AT4G39080 1312 / 0.0 vacuolar proton ATPase A3 (.1) Lus10028796 [exp] 894 / 0 AT4G39080 1193 / 0.0 vacuolar proton ATPase A3 (.1) Lus10017488 [exp] 114 / 7e-30 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234100 [exp] 1070 / 0 AT2G21410 1194 / 0.0 vacuolar proton ATPase A2 (.1) Potri.002G028600 [exp] 1059 / 0 AT2G21410 1187 / 0.0 vacuolar proton ATPase A2 (.1) Potri.009G121400 [exp] 1035 / 0 AT4G39080 1300 / 0.0 vacuolar proton ATPase A3 (.1) Potri.004G160400 [exp] 1019 / 0 AT4G39080 1245 / 0.0 vacuolar proton ATPase A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [flax] [poplar] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Lus10018129 pacid=23145249 polypeptide=Lus10018129 locus=Lus10018129.g ID=Lus10018129.BGIv1.0 annot-version=v1.0 ATGGACCAATTCATGGAGAATCTCCCCTCCATGGATCTGATGCGCTCCGAGAAGATGGCCTTCGTTCAACTCATTATCCCTGTCGAGTCCGCCCACCGGG CCATCTCTTACCTCGGCGAAATAGGCCTTCTCCAATTCCGTGACATGAATACTGATAAAAGTCCGTTCCAGAGAACATTTGTTAATCAGGTTAAGAGGTG TGGAGAAATGTCAAGGAAGTTGAGGTTTTTGAAAGATCAGATACAAAAAGCTGCTATGTTATCTTCTGCTCATTCTACTCTAGAACCTGATATTGAGCTG GAGGAATTAGAGGCACAGCTTGCTGAGCACGAACATGAGCTAATTGAGATGAATTCCAACAGTGAGAAACTTCGGCAGTCGTACAATGAACTCTTAGAAT TCAAGATAGTTTTGCAGAAGGCAGTTGACTTTCTTGTATCAGACAATAGTCGAGCAGTTGCTGACGACACTGAGTTGAATGAAAATGTCCACTCCAATGG TGATTTTGGAGAAACATCGTCATTGCTTGAACAGGAAATGAGGTCAGGGCCTACAGGCCAATCCACTGTTAGATTTATTAGTGGAATTATACCTAGATCC AAAGTTTTGAGGTTTGAGAGGATGTTGTTCCGTGCTACAAGGGGAAACATGCTTTTTAATCAAGCTCTGGCAGATGAGGAGACCTTAGATCCTGTTACAA ATGATACGGTTGAGAAAATAGTATTTGTAGTATTTTTCTCGGGTGAACAGGCAAGAACAAAGATCATAAAAATTTGTGAAGCATTTGGGGCAAATTGCTA CCCTGTTCCTGAGGATATAACTAAGCAAAGGCAATTAACTAGAGAGGTCATGTCACGTCTTTCTGAGTTAGAAGTCACTTTGGATGCTGGAATTCGCCAC AGAAATCAAGCCCTTGCTTCCATTGGCCTGCATCTAACAAAGTGGATTAACATGGTGAGAATGGAGAAAGCTGTGTATGATACATTGAATATGCTTAATT TTGATGTGACAAAAAAGTGTCTAGTTGGAGAGGGTTGGTGCCCGTTATTTGCAAAAGCTCAGATTCAGGATGTGCTGCAACGTGCAACATATGACAGTAG TTCACAAGTTGGAATTATATTTCATGTGATGGAAGCTACAGAATCACCGCCTACTTATTTCAGGACTAATAGCCTCACTAATGCCTTCCAGGAGATTGTT GATGCATATGGGGTTGCTAGGTATCAGGAAGCAAATCCTGCAGTTTACACTGTTGTGACATTTCCCTTTCTCTTCGCGGTTATGTTTGGAGATTGGGGTC ATGGAATATGTTTGCTTTTGGGAGCACTATTCCTTATAGCTCGTGAGAAAAAGCTGAGTGCTCAGAAACTTGGAAGCTTTATGGAGATGCTTTTTGGTGG ACGCTATGTACTCCTTTTAATGTCTCTTTTCTCAATATACTGTGGGCTGATCTACAATGAGTTCTTCTCCGTTCCTTTCCACATATTTGGGGGGTCAGCT TACAGATGCCGAGATAACTCCTGCAGGGATGCTCATACTGTTGGTTTGGTGAAATTTCAAGATCCGTACCCATTTGGAGTAGATCCTAGTTGGCGTGGAA GTCGTTCAGAATTACCATTTCTGAACTCTATGAAGATGAAAATGTCAATTTTATTGGGTATTGCACAGATGAATCTTGGAATCATAATGAGTTATTTCAA TGCACGGTTTTTCAGAAGCTCACTAGATATAAGGTATCAGTTTGTGCCGCAGATAATCTTCCTCAATTCGCTATTTGGGTATCTTTCACTTCTCATTATC ATCAAGTGGTGCAGTGGTTCCCAGGCAGATCTTTATCATGTCATGATTTATATGTTTCTAAGCCCCACTGATGCTCTTGGTGAGAATGAGCTGTTCTGGG GCCAAAGGCCGCTTCAGATCGTGTTGTTGCTTTTGGCTTTAATTGCAGTTCCTTGGATGCTGTTTCCTAAACCATTTATTTTGAAGAAGCTTCATACGGA GAGATTTCAAGGTCGTACCTATGGTATGCTGGGAACCTCTGAAATTGACCTGGACTCCGAACCTGATTCGGCAAGGGCGGTGCATCATGAAGATTTTAAT TTCAGTGAGGTGTTTGTTCACCAAATGATACACTCTATTGAGTTTGTACTTGGTGCAGTCTCCAATACAGCATCATATCTTCGTCTTTGGGCCTTAAGTC TGGCCCACTCTGAATTATCCACAGTTTTCTATGAGAAAGTACTGCTCTTCGCGTGGGGGTACGAAAACATTGTTATAAGGTTGGTCGGACTTGCAGTTTT TGCATTTGCGACCACTTTTATACTGCTGATGATGGAGACGCTAAGCGCTTTCCTGCACGCACTGCGTCTCCACTGGGTGGAATTCCAGAACAAATTCTAC TTTGGGGATGGCTACAAGTTCAGACCTTTTTCGTTTGCCGCTTTAGTCGAAGATGAGGATTAG
AA sequence Show only first row Show all	>Lus10018129 pacid=23145249 polypeptide=Lus10018129 locus=Lus10018129.g ID=Lus10018129.BGIv1.0 annot-version=v1.0 MDQFMENLPSMDLMRSEKMAFVQLIIPVESAHRAISYLGEIGLLQFRDMNTDKSPFQRTFVNQVKRCGEMSRKLRFLKDQIQKAAMLSSAHSTLEPDIEL EELEAQLAEHEHELIEMNSNSEKLRQSYNELLEFKIVLQKAVDFLVSDNSRAVADDTELNENVHSNGDFGETSSLLEQEMRSGPTGQSTVRFISGIIPRS KVLRFERMLFRATRGNMLFNQALADEETLDPVTNDTVEKIVFVVFFSGEQARTKIIKICEAFGANCYPVPEDITKQRQLTREVMSRLSELEVTLDAGIRH RNQALASIGLHLTKWINMVRMEKAVYDTLNMLNFDVTKKCLVGEGWCPLFAKAQIQDVLQRATYDSSSQVGIIFHVMEATESPPTYFRTNSLTNAFQEIV DAYGVARYQEANPAVYTVVTFPFLFAVMFGDWGHGICLLLGALFLIAREKKLSAQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGGSA YRCRDNSCRDAHTVGLVKFQDPYPFGVDPSWRGSRSELPFLNSMKMKMSILLGIAQMNLGIIMSYFNARFFRSSLDIRYQFVPQIIFLNSLFGYLSLLII IKWCSGSQADLYHVMIYMFLSPTDALGENELFWGQRPLQIVLLLLALIAVPWMLFPKPFILKKLHTERFQGRTYGMLGTSEIDLDSEPDSARAVHHEDFN FSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLFAWGYENIVIRLVGLAVFAFATTFILLMMETLSAFLHALRLHWVEFQNKFY FGDGYKFRPFSFAALVEDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	0	1
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Lus10032842 [exp]	2.0	0.8922
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	3.7	0.9094
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	4.9	0.8795
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	6.3	0.9056
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10007999 [exp]	7.5	0.8542
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10036938 [exp]	9.1	0.8399
AT2G15900			Phox-associated domain;Phox-li...		Lus10012043 [exp]	11.6	0.8941
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	15.4	0.8750
AT4G31570			unknown protein		Lus10026934 [exp]	15.5	0.8809
AT5G04480			UDP-Glycosyltransferase superf...		Lus10028829 [exp]	16.1	0.8654

Compare expression of checked genes

Lus10018129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.