Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44050 243 / 1e-81 COS1 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028541 [exp] 361 / 8e-128 AT2G44050 288 / 2e-99 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Lus10043431 [exp] 242 / 2e-78 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2) Lus10034145 [exp] 240 / 2e-77 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10000192 [exp] 163 / 5e-51 AT2G44050 148 / 1e-45 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001800 [exp] 246 / 9e-83 AT2G44050 291 / 1e-100 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Potri.007G146000 [exp] 239 / 4e-80 AT2G44050 279 / 6e-96 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00885 [flax] [poplar] DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase
Representative CDS sequence Show only first row Show all	>Lus10018133 pacid=23145226 polypeptide=Lus10018133 locus=Lus10018133.g ID=Lus10018133.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTTTTGACATCGCCGTCCACCAAAACATCCTCGTCTCTTCTCACCAACCACCGCAGTCAACGCCGCCGATGCCACATCACAACCATCAACC ACCTCTCGTTCTCCTCCTCTAATTCCTCTAACTCCCCCGTCTCCGTCCCGCAGCCTCACCAAGGTTTTGGGAATGCTAGCGCTCTTACTCCCGTCGTGGC GAAACGGAAATCGTCGCTTCTGGAAGCGCCGGAAGCTGTAAAGCATGTTGTTGGATCGCTTACACGAGCTGAAGGGCTCCGATTCGCTGTGGTGGTTGCG CGGTTCAATGAGATAGTGACTAGGCGGCTGTTAGAAGGAGCTATCGAGAATTTCACGAGGTACTCCGTCAACGAAGAAGACATCGATGTTGTTTGGGTTC CTGGTAGTTTTGAAGTAGGTGTAGTTGCAGAGAAGCTAGGCAAGTCAGGGAAGTATAATGCAGTGTTGTGTATTGGAGCTGTGATAAGAGGTGACACCTC TCATTATGATGCTGTTGCGAATTCTGCTGCATCTGGAGTACTGTCAGCTGGTCTAAACTCAGGAGTCCCATGTATATTTGGTGTCCTTACATGTGAAGAT ATGGACCAGGCTCTCAACCGGGCTGGCGGGAAAGCCGGTAACAAAGGTGCTGAGGCTGCTTTGACCGCTATTGAGATGGCATCCTTGTTTGAGCATCACT TGAAGGACTGCTAA
AA sequence Show only first row Show all	>Lus10018133 pacid=23145226 polypeptide=Lus10018133 locus=Lus10018133.g ID=Lus10018133.BGIv1.0 annot-version=v1.0 MASLLTSPSTKTSSSLLTNHRSQRRRCHITTINHLSFSSSNSSNSPVSVPQPHQGFGNASALTPVVAKRKSSLLEAPEAVKHVVGSLTRAEGLRFAVVVA RFNEIVTRRLLEGAIENFTRYSVNEEDIDVVWVPGSFEVGVVAEKLGKSGKYNAVLCIGAVIRGDTSHYDAVANSAASGVLSAGLNSGVPCIFGVLTCED MDQALNRAGGKAGNKGAEAALTAIEMASLFEHHLKDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	0	1
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	3.0	0.7676
AT3G51010			unknown protein		Lus10028346 [exp]	3.5	0.7074
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	7.0	0.6938
AT4G02450			HSP20-like chaperones superfam...		Lus10026136 [exp]	7.2	0.7170
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	7.7	0.6943
AT3G25545			unknown protein		Lus10029095 [exp]	19.9	0.6774
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10024590 [exp]	22.4	0.7037
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	25.4	0.6665
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10014277 [exp]	25.6	0.6966
AT3G13440			S-adenosyl-L-methionine-depend...		Lus10008072 [exp]	27.1	0.5940

Compare expression of checked genes

Lus10018133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.