Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 511 / 5e-173 MATE efflux family protein (.1) AT1G15150 499 / 4e-168 MATE efflux family protein (.1) AT1G71140 494 / 5e-166 MATE efflux family protein (.1) AT1G15180 493 / 1e-165 MATE efflux family protein (.1.2) AT1G15160 486 / 3e-163 MATE efflux family protein (.1) AT2G04080 428 / 1e-140 MATE efflux family protein (.1) AT1G66760 426 / 9e-140 MATE efflux family protein (.1.2) AT2G04100 424 / 6e-139 MATE efflux family protein (.1) AT2G04050 422 / 2e-138 MATE efflux family protein (.1) AT2G04070 421 / 6e-138 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028540 [exp] 1680 / 0 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 652 / 0 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 650 / 0 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 641 / 0 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 637 / 0 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10018135 [exp] 609 / 0 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 474 / 2e-157 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 465 / 6e-155 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10009140 [exp] 429 / 9e-141 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126500 [exp] 621 / 0 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 600 / 0 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 579 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 478 / 3e-160 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 458 / 3e-152 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.004G094900 [exp] 445 / 2e-147 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120500 [exp] 443 / 2e-146 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.017G120600 [exp] 436 / 9e-144 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094800 [exp] 428 / 2e-141 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120400 [exp] 425 / 2e-139 AT2G04100 508 / 3e-178 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10018134 pacid=23145208 polypeptide=Lus10018134 locus=Lus10018134.g ID=Lus10018134.BGIv1.0 annot-version=v1.0 ATGATCGCGGAGCGGCAGAGCTTGCTTCTGCCGGAGAAACAATTCACCGCCGCCGATGACGACGACGACGCAAGAGCGGGGTTAATCCGTCGGGAGCTGA AAGAGCTAGGGTACATTGCAGGCCCGATGGTGGCGATGAATCTTTCCCAGTACATGCTGCAAATCACGTCGTTGATGATGGTCGGACACATCGGCCAGCT GGAACTCTCCGCCATCGCCATTGCCGTCTCTTTGTTCACCGTCACCGGCTCCAGCGTCCTCATTGGGATGTCGAGTGCCCTTGAAACCTTGTGTGGGCAA GCCTATGGAGCTAAGCAGTACAAGAAACTTGCGACGCAAACTTACACTGCAATATTCTGCCTATTATTAGCCTGCATTCCCATTTCCTTGCTCTGGATCA ACATGGAGAGCGTACTTGTTTTAGTTGGACAAGATCCCACCATCTCACGTGAAGTTGGGAAGCTACAGATATGGCTGATTCCGTCTCTATTTGCTTACGC AATGGTCCAGCCGGTTGTTCGATACCTTCAAGTACAAAGCTTGGTGCTCCCCATGCTAACGACTGCTGTTATTTCGCTTGCTTTCCATCTACCAGTGTGC TGGTTTTTGGTGTTCAGGACTAGACTGCGGGAAGTGGGGGCAGCATTGGCAATTTGCTTGTCGAATTGGTTGACCTTTGTTGGTCTTGCGGTTTACGTGA AGTACTCACATTCATGTGCCAAGACTAGGGCTCCTATTTCTATGGAGACGTTCCGTGGTATTGGGGTGTTCTTCCGCTATGCTATCCCTTCTGCTTTCAT GCTCTGCTTGGAGTGGTGGTCGTTTGAGCTTGTGGTTTTGCTTTCGGGTTTACTCCCTAATCCCGTGCTTGAAACATCAGTCCTATCAGTGTGTCTCAGC ACCACTTCAACTTTCTACTCTATACCATTTGGACTTGGTGCTGCAGCTAGCACTAGAGTCTCAAATGAGCTAGGAAGAGGGAGACCAGAGGCGGCTCGAA GATCAGTAAGCTGTGTGCTATCCATTGCAGCGACTGAGGCATTGTTACTGAGTGGTGCCCTCTTTCTATGCCGTCATGTCTTTGGTTATAGCTTCAGCAA TGACAAGGAAGTGGTTGACTATGTCACCAAGATGGCTCCTCTGTTATGCTTGTCAGTGATAATGGACAGTTTGCAAGGGGTTCTTTCAGGAATTGCAAGG GGGTGTGGATGGCAGGATATAGGAGCTTATGTTAACCTTGGAGCCTTCTATCTAATCGGCATTCCTGTAGGAGTTTTGTTGGGTTTCTGGACAGACCTAA GAGGGACGGGTCTTTGGATTGGAGTTCTAGTTGGTTCATTTGCACAGACACTACTTCTATTCCTCGTTACAGTTTGCACTAACTGGGAAAAACAGGGGAT GGAAGAAGTGGGGAACTATGATGACATGAAAGAAAGCTTGGTTCCCAAAGAGAGGGAAGAAGGAAGAGATGTTACATGGGATGTTTATATCCAGGAAGCT AAGAAGCTTGGTTACATAGCAGTGCCTATGGTTGCTGTGAATCTATCGATGTGCGCGCTAAACGTCGTGTCGTTGATGATGGTTGGTCATCTTGGTGAGC TAGCTCTTTCTAGCTCTGCCATTGCCATCTCTCTTTCCAATGTCACCTGCTTCAGCCTTCTGGTAGGTATGTCAAGTGCTCTAGAAACACTATGCGGACA AGCTTATGGAGCACAGCAATACAGGAAGATTGGAATGCAAACATACAGTGCCATCTTCTCCTTGATCTCGGTTTGCATCGTTCTTTCTTTAGCATGGTTC AATATGGAGTGGATTTTGGTGCAAATTGGTCAGGATCCCATCATTGCTCATGAAGCTGGTGTCTTCACAAAGTGGCTTGTGCCTGCATTTTTTGCTGCTG CAGTATATCAGCCTCTGGTCAGGTACTACCTGGCACAAAGTCTAATCATTCCAATGCTGATGTGCTCCTGCCTCACAATCACTGTCCACATTCCTCTCTC TTGGGTTTTGATCTTCAAATCCGGACTCAATAACCTTGGCGGTGCACTTTCAGTAGGCATATCCTTCTGGTTGAATGTCACGTTTCTTCTACTTTTCATG GCATTCTCTCCTTCCTGTGCAAAAACTCGTGTTCCGATCTCCATGGAGTTATTCCACGGAATTGGAGAGTTCTTCTGCCTCGCTGTCCCTTCTGCAACCA TGATTTGCCTGCAATGGTGGTCATATGAAGTTGTAATCATGCTATCGGGGCTGTTGCCCAATCCACAACTCCAAACTTCAGTCCTCTCCATTTGTCTCAC AACAATTGGAACACTATATGCTGTACCATACGGGCTAGGTGCTGCAGTAAGCACTAGAGTTGCGAACGAGCTAGGAGCCGGGAACACACGAGCTGCTCGC AGAGCAGTGCACACAGTCATAATCCTGGCAGTTGCAGAGCTGGCTATAGTGAGTGGAATCCTTTTCACAGGGAGACAGGTTTTTGGATACTCATTCAGTA GTGACATAGAAGTTGTGAAACATGTATCCGACATGGCTCCTCTGGTTTGCCTCTCCATCATCGTGGATGGCTTACAAGAAATCCTTTCAGGAGTTGCTAG AGGCTGTGGGTGGCAGCATATTGGAGCATATGTGAATCTGGCTGCATTATATCTCTGTGGAATTCCAGTAGCTGGTTTGCTGGGATTTTGGTTCCAACTT GATGGCAAAGGGCTATGGATTGGGATTCAAGTTGGTGCCACTTTACAAACTGTTCTTCTTGCTCTGGTTACTGGCTGCACCAATTGGGAGAAACAGGTGA AGCAGCTGACTCATCCCGTCAAGTGA
AA sequence Show only first row Show all	>Lus10018134 pacid=23145208 polypeptide=Lus10018134 locus=Lus10018134.g ID=Lus10018134.BGIv1.0 annot-version=v1.0 MIAERQSLLLPEKQFTAADDDDDARAGLIRRELKELGYIAGPMVAMNLSQYMLQITSLMMVGHIGQLELSAIAIAVSLFTVTGSSVLIGMSSALETLCGQ AYGAKQYKKLATQTYTAIFCLLLACIPISLLWINMESVLVLVGQDPTISREVGKLQIWLIPSLFAYAMVQPVVRYLQVQSLVLPMLTTAVISLAFHLPVC WFLVFRTRLREVGAALAICLSNWLTFVGLAVYVKYSHSCAKTRAPISMETFRGIGVFFRYAIPSAFMLCLEWWSFELVVLLSGLLPNPVLETSVLSVCLS TTSTFYSIPFGLGAAASTRVSNELGRGRPEAARRSVSCVLSIAATEALLLSGALFLCRHVFGYSFSNDKEVVDYVTKMAPLLCLSVIMDSLQGVLSGIAR GCGWQDIGAYVNLGAFYLIGIPVGVLLGFWTDLRGTGLWIGVLVGSFAQTLLLFLVTVCTNWEKQGMEEVGNYDDMKESLVPKEREEGRDVTWDVYIQEA KKLGYIAVPMVAVNLSMCALNVVSLMMVGHLGELALSSSAIAISLSNVTCFSLLVGMSSALETLCGQAYGAQQYRKIGMQTYSAIFSLISVCIVLSLAWF NMEWILVQIGQDPIIAHEAGVFTKWLVPAFFAAAVYQPLVRYYLAQSLIIPMLMCSCLTITVHIPLSWVLIFKSGLNNLGGALSVGISFWLNVTFLLLFM AFSPSCAKTRVPISMELFHGIGEFFCLAVPSATMICLQWWSYEVVIMLSGLLPNPQLQTSVLSICLTTIGTLYAVPYGLGAAVSTRVANELGAGNTRAAR RAVHTVIILAVAELAIVSGILFTGRQVFGYSFSSDIEVVKHVSDMAPLVCLSIIVDGLQEILSGVARGCGWQHIGAYVNLAALYLCGIPVAGLLGFWFQL DGKGLWIGIQVGATLQTVLLALVTGCTNWEKQVKQLTHPVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	0	1
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	1.0	0.9811
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	3.5	0.9735
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	5.3	0.9717
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	6.3	0.9639
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	7.3	0.9680
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	8.4	0.9689
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	9.4	0.9649
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	9.5	0.9721
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	13.6	0.9566
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10030929 [exp]	14.4	0.9616

Compare expression of checked genes

Lus10018134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.