Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 478 / 3e-166 MATE efflux family protein (.1) AT1G71140 471 / 1e-163 MATE efflux family protein (.1) AT1G15150 467 / 4e-162 MATE efflux family protein (.1) AT1G15160 452 / 3e-156 MATE efflux family protein (.1) AT1G15180 452 / 3e-156 MATE efflux family protein (.1.2) AT2G04080 402 / 8e-137 MATE efflux family protein (.1) AT2G04050 398 / 3e-135 MATE efflux family protein (.1) AT2G04040 396 / 2e-134 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04100 394 / 1e-133 MATE efflux family protein (.1) AT2G04070 393 / 4e-133 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018136 [exp] 773 / 0 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 689 / 0 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 688 / 0 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 599 / 0 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 597 / 0 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 499 / 3e-176 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10000619 [exp] 449 / 2e-154 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 437 / 3e-150 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10009140 [exp] 435 / 2e-149 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116900 [exp] 588 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 540 / 0 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 536 / 0 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G094900 [exp] 469 / 5e-163 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.004G093400 [exp] 451 / 6e-156 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094800 [exp] 447 / 5e-155 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120600 [exp] 446 / 8e-154 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.017G120400 [exp] 444 / 2e-153 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.004G094700 [exp] 424 / 2e-145 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120500 [exp] 416 / 4e-142 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10018135 pacid=23145243 polypeptide=Lus10018135 locus=Lus10018135.g ID=Lus10018135.BGIv1.0 annot-version=v1.0 ATGCCGGATAGCGGCAGCGAAACGGAGCAGAGACTCCTCCAACCCCTAAAATCACGGCCGGTCGGCCTCGGAATGACACGGACCGTGTTCTTCGAGGAAC TGAAACAGCTAGGCTACATAGCCGGACCGATGATAGCGATGAATCTGTCTCAGTACCTAGTCCAAGTCATTTCGCTGATGATGGTCGGGCATCTAGGCGA GCTCGAGCTCTCCAGTACCGCCATAGCTGTTTCTCTCGGTGGCGTCACCGGTACCAGCATCTTGGTAGGGATGTCAAGTGCGCTGGAAACTCTGTGTGGG CAAACATACGGGGCAGGCCAATATCAGAGAGTTGGAACTCAAACGTATACAGCAATCTTCTGCTTATTGCTGGTTTGTATTCCCCTGTCGATTGTGTGGA TCTACATAGAGAACATACTTGTTTTCGTAGGCCAAGATCCGACCATGTCACATGAAGCTGGAAAATTCCAAATGTGGCTTATTCCTTGTCTATTCTCAAA CGCATTGGTTCAGCCGATGCTTCGATTCCTCCAAGCACAAAGTTTGATCATCCCGTTGATCATTACTTCTATCAGTACCCTATGTTTCCATGTGCCTGTA TGTTGGGCTTTGGTGTTCAGGACCCGACTGCAGCACTTGGGAGCAGCATTAGCTATGGGTCTATCAAATTGGCTGAGCTTTTTTACCCTTGCTCTGTATA TTAAGTACTCCCCTTCTTGTGCCAAAACTAGGGCCCCCATTTCTAAGGAGTTGTTCCATGGCATTGGTGAGTTCTTCCGCTACGCCATCCCTTCCACAGT AATGCTTTGCCTAGAATGGTGGTCATTTGAGCTTCTCATCCTGCTTTCAGGCCTCTTGCCAAACCCTGGACTCGAAACGTCGGTCCTATCAGTCTGCACT CGAGTCTCAAACTTGCTAGGCAGAGGTAATCCAGAGGCTGCTCGAATAGCAGTGTGTTCATCGATGTCTGTTGTAGCGGCTGAGGCACTAGTAGTGAGCA TTTCCCTCTTTGCATGCCGTCACGTCTTTGGTTATAGCTTCAGCAATGAAAAGGAAGTGATAGACTACGTCACAAAGATGGCTCCTCTGATTTGCTTGTC AGTCGTCTTGGACAGTTTGCAAGGCGTTCTCTCAGGAATCGCAAGGGGATGTGGATGGCAGCATATCGGAGCGTACGTCAACCTTGGCGCATTCTACCTC TGCGGCATCCCGGTTGGAGTTCTATTAGGGTTCTGGACTGACCTAAGAGGGATGGGACTCTGGATTGGCGTCCAAGCCGGGGCATTTACACAAACTACTC TCCTCTTTCTCGTCACAATATGCACCAACTGGGAAAAACAGGCAAGTGATGCTAGGCAGAGGGTGTTCGAAGGAGGTCCGGCCATTACGAACGTGCCGAT TTGA
AA sequence Show only first row Show all	>Lus10018135 pacid=23145243 polypeptide=Lus10018135 locus=Lus10018135.g ID=Lus10018135.BGIv1.0 annot-version=v1.0 MPDSGSETEQRLLQPLKSRPVGLGMTRTVFFEELKQLGYIAGPMIAMNLSQYLVQVISLMMVGHLGELELSSTAIAVSLGGVTGTSILVGMSSALETLCG QTYGAGQYQRVGTQTYTAIFCLLLVCIPLSIVWIYIENILVFVGQDPTMSHEAGKFQMWLIPCLFSNALVQPMLRFLQAQSLIIPLIITSISTLCFHVPV CWALVFRTRLQHLGAALAMGLSNWLSFFTLALYIKYSPSCAKTRAPISKELFHGIGEFFRYAIPSTVMLCLEWWSFELLILLSGLLPNPGLETSVLSVCT RVSNLLGRGNPEAARIAVCSSMSVVAAEALVVSISLFACRHVFGYSFSNEKEVIDYVTKMAPLICLSVVLDSLQGVLSGIARGCGWQHIGAYVNLGAFYL CGIPVGVLLGFWTDLRGMGLWIGVQAGAFTQTTLLFLVTICTNWEKQASDARQRVFEGGPAITNVPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010943 [exp]	2.4	0.8723
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	3.5	0.8588
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	4.5	0.8534
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	4.8	0.9008
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	5.5	0.8346
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10004828 [exp]	5.7	0.8152
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	7.5	0.8235
					Lus10005426 [exp]	8.1	0.7465
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	9.0	0.7851
					Lus10026124 [exp]	10.7	0.7921

Compare expression of checked genes

Lus10018135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.