Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71140 520 / 0 MATE efflux family protein (.1) AT1G15170 514 / 4e-180 MATE efflux family protein (.1) AT1G15150 508 / 1e-177 MATE efflux family protein (.1) AT1G15160 499 / 3e-174 MATE efflux family protein (.1) AT1G15180 487 / 1e-169 MATE efflux family protein (.1.2) AT2G04100 442 / 8e-152 MATE efflux family protein (.1) AT2G04080 435 / 4e-149 MATE efflux family protein (.1) AT2G04040 432 / 3e-148 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04050 431 / 2e-147 MATE efflux family protein (.1) AT2G04090 429 / 8e-147 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018135 [exp] 760 / 0 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 732 / 0 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 729 / 0 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 645 / 0 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 642 / 0 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 540 / 0 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10000619 [exp] 497 / 9e-173 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 476 / 3e-165 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10009140 [exp] 475 / 7e-165 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116900 [exp] 637 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 575 / 0 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 566 / 0 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G094900 [exp] 490 / 5e-171 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.004G093400 [exp] 487 / 7e-170 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120600 [exp] 480 / 7e-167 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.017G120400 [exp] 473 / 5e-164 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.004G094800 [exp] 471 / 6e-164 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.004G094700 [exp] 465 / 6e-161 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120500 [exp] 451 / 2e-155 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10018136 pacid=23145177 polypeptide=Lus10018136 locus=Lus10018136.g ID=Lus10018136.BGIv1.0 annot-version=v1.0 ATGGCGCCAGCCAGCAGCAGCGAAGCAGAGCAGAGACTCCCCCTCCTACCCGTAAAATCACGGTCGGACGACGGCGGCGCCGATGACTCATCCACCGGCG GCGGAATGACACGGACCGTGTTCTTCGCGGAGCTGAAACGGCTAGGCTACATAGCCGGACCGATGATAGCGATGAACCTGTCTCAGTACCTAGTCCAAGT AATTTCGCTGATGATGGTCGGGCATCTAGGCGAGCTCGAACTCTCCAGCACCGCCATAGCCGTTTCTCTCTCCAGCGTCACCGGCATCAGCGTCCTCATA GGGATGTCAAGTGCACTGGAAACTCTGTGTGGACAGACATTCGGGGCTGGTCAATATCGGAGAGTTGGAACTCAAACTTACACAGCAATCTTCTGCTTAT TGTTGGTCTGTATTCCCCTATCAATCTTATGGACCTACATGGAGAACATACTTGTTTTTGTCGGCCAAGATCCAACCATCTCACGTGAAGCCGGGAAATT CCAGATGTGGCTCATTCCTTGTCTCTTCTCTAATGCATTGGTTCAGCCGATGCTTCGATATCTCCAAGCACAAAGTTTGATCATTCCATTGCTCATAACC TCTGTCAGTACCCTTTGTTTCCATGTGCCTGTCTGTTGGGCCTTAGTGTTCAGGACCAGACTGCATCACTTGGGAGCAGCATTGGCTATGGGACTGTCAT ACTGGCTGAGTTTTATTATTCTTGCTCTGTATGTCAAGTACTCCCCTTCTTGTGCCAAAACTAGGGCCCCCATTACCAAGGACTTGTTCCATGGCATTGG CGAGTTCTTCCGCTATGCCATCCCTTCCACAGTAATGCTATGCCTAGAATGGTGGTCATTTGAGCTTCTCGTCCTGCTTTCCGGCCTCTTGCCAAACCCG GAACTCGAAACATCTGTCCTATCAGTCTGTCTCACAACCATCGCAACTTTCTACTCCATACCAAATGGACTTGGCGCTGCAGCAAGCACTCGAGTCTCAA ACGAGCTAGGCAGAGGTGATCCAGAGGCGGCTCGAATATCTGTGTATTCCGCGATGTCTGTTACAGCGGCTGAGGCACTACTAGTGAGCACTTCACTCTT TGCATGCCGTCGTGTCTTTGGTTATAGCTTCAGCAATGACAAGGAAGTGATAGACTACGTCACAAGGATGGCTCCTCTGGTTTGCTTGTCAGTCATCATG GACAGTTTGCAAGGCGTTCTCTCAGGAATCGCAAGGGGGTGCGGATGGCAACATATAGGAGCGTACGTCAACCTTGGTGCATTCTACCTCTGCGGCATCC CGGTTGGAGTCCTATTAGGGTTCTGGACTGACCTAAGAGGCATGGGGCTTTGGATTGGCGTCCAAGCTGGCGCATTTACACAAACTATTCTCCTCTTTCT CGTCACGATATGCACCAACTGGGAAAAACAGGCAAGTGATGCTAGGCAGAGGGTGTTCGAAGGAGGTCCGACCATTACGAACGCGTAG
AA sequence Show only first row Show all	>Lus10018136 pacid=23145177 polypeptide=Lus10018136 locus=Lus10018136.g ID=Lus10018136.BGIv1.0 annot-version=v1.0 MAPASSSEAEQRLPLLPVKSRSDDGGADDSSTGGGMTRTVFFAELKRLGYIAGPMIAMNLSQYLVQVISLMMVGHLGELELSSTAIAVSLSSVTGISVLI GMSSALETLCGQTFGAGQYRRVGTQTYTAIFCLLLVCIPLSILWTYMENILVFVGQDPTISREAGKFQMWLIPCLFSNALVQPMLRYLQAQSLIIPLLIT SVSTLCFHVPVCWALVFRTRLHHLGAALAMGLSYWLSFIILALYVKYSPSCAKTRAPITKDLFHGIGEFFRYAIPSTVMLCLEWWSFELLVLLSGLLPNP ELETSVLSVCLTTIATFYSIPNGLGAAASTRVSNELGRGDPEAARISVYSAMSVTAAEALLVSTSLFACRRVFGYSFSNDKEVIDYVTRMAPLVCLSVIM DSLQGVLSGIARGCGWQHIGAYVNLGAFYLCGIPVGVLLGFWTDLRGMGLWIGVQAGAFTQTILLFLVTICTNWEKQASDARQRVFEGGPTITNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71140			MATE efflux family protein (.1...		Lus10018136 [exp]	0	1
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	11.5	0.6962
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	13.8	0.5882
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	15.5	0.6630
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	17.7	0.6205
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10037341 [exp]	24.3	0.6502
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	28.7	0.6613
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	30.4	0.5531
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10011548 [exp]	37.5	0.6308
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10041709 [exp]	49.2	0.5617
AT2G23770			protein kinase family protein ...		Lus10041323 [exp]	55.5	0.5551

Compare expression of checked genes

Lus10018136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.