Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21710 456 / 1e-159 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) AT3G47830 56 / 2e-08 DNA glycosylase superfamily protein (.1) AT4G34060 45 / 8e-05 DML3 demeter-like protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028539 [exp] 669 / 0 AT1G21710 464 / 1e-163 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Lus10028538 [exp] 91 / 3e-19 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10034120 [exp] 51 / 9e-07 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 47 / 4e-05 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180700 [exp] 498 / 3e-176 AT1G21710 452 / 1e-159 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Potri.015G071300 [exp] 49 / 3e-06 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein CL0407 [flax] [poplar] TBP-like PF07934 [flax] [poplar] OGG_N 8-oxoguanine DNA glycosylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018137 pacid=23145215 polypeptide=Lus10018137 locus=Lus10018137.g ID=Lus10018137.BGIv1.0 annot-version=v1.0 ATGAAGCGAGCAAGACTCACCGTAAAACCGCCGGCGGCGCCTATTCCTCCAACGCCGCCGCAAACTACACAAGCTCTCCTCAGGAAACCTAGAAAAGCAA TCTCAAACCATCGCGCTGCCGTCATCGCTACTGTATCATCGAACTCCACAACCTGGTCCCCGCTTAATCTAAGCCAGTCGGAACTCTATCTCCCGCTCAC ATTCCCCACCGGACAGACCTTCCGCTGGAAGAAAACCGGCGATCTCCAGTACACTGGAACCCTTGGCCCTCACTTGATCTCTCTTAAGCACCAGGAGGAT GAAACCGGCGACGTATATTACCACGTTCATCGCACGCCGTCGCGATCCGACGCGGAATCGGCGCTCCGCGACTTCCTTAACTTCGAGGTCTCCCTCGCCG AGATTTGGCGGGAGTTTTCAGCCTCCGATCCGAGATTCGCTGAGCTGGCAATACATCTGAAGGGAGCTAGGGTTCTGAGGCAGGATCCGCTGGAGTGTTT GGTTCAGTTCCTGTGCTCATCGAACAATAACATCGGCCGGATTACTAAGATGGTGAACTTTCTCTCGTCGTTAGGGGAGCATTTGGGGACCGTTGGGGAT TTTGAGTTTCATGAGTTTCCGTCGCTGGAGAGATTGGCCTTGGTTACTGAGCAGCAGCTTAGAGAAGCTGGTTTTGGTTATAGGGCGAAGTATATTACTG GGACAGTAGATGCTTTGCAGTCAAAACCTGGCGGAGGTTCAGCTTGGCTTGAATCTCTGCGTAAATTGGAGCTGCAAGTTGTGATTGATGCTTTGGTTAC TTTGCCCGGAGTTGGTCCGAAAGTAGCGGCTTGCATTGCTCTCTTCTCTCTTGATCAACACCATGCCATTCCTGTTGATACCCATGTGTGGCAGATTGCT ACAAGATACCTCCTACCCGAGCTTGCAAGTACAAAGCTGACGCCAAAGCTATGTGTTCGTGTTGCTGATGCATTCGTGACGAAGTATGGCAAATATGCTG GCTGGGCGCAGACTTTACTTTTCATAGCTGAATTGCCTCCGCAGAAAGCTCTTGTCTCATCAGATTCAACGTCTCCCGAAGATACTAAATCTATGGGAAA GAAGGACAAGAAGTCGCAGAAACGTGAGATAGTTGTTCCCCTACAAGGAAATGGATTCCTTGACATATTTACTGGATGCCGTATTGGCGAAATATTCCAA CGTATTGGCGAAATATTCCAACTCTTCAATGTCACGAGCATCGGGCATCAACCAGTAGAACTTTGGGGATCCCTGGACATGGATCACCACCAAAATTTTG TTTTGAGAGGCTTATGGTACAGTCCTCCTTCCCTACGCAAGCCTGAGAAAGTATTCTACTGTTAG
AA sequence Show only first row Show all	>Lus10018137 pacid=23145215 polypeptide=Lus10018137 locus=Lus10018137.g ID=Lus10018137.BGIv1.0 annot-version=v1.0 MKRARLTVKPPAAPIPPTPPQTTQALLRKPRKAISNHRAAVIATVSSNSTTWSPLNLSQSELYLPLTFPTGQTFRWKKTGDLQYTGTLGPHLISLKHQED ETGDVYYHVHRTPSRSDAESALRDFLNFEVSLAEIWREFSASDPRFAELAIHLKGARVLRQDPLECLVQFLCSSNNNIGRITKMVNFLSSLGEHLGTVGD FEFHEFPSLERLALVTEQQLREAGFGYRAKYITGTVDALQSKPGGGSAWLESLRKLELQVVIDALVTLPGVGPKVAACIALFSLDQHHAIPVDTHVWQIA TRYLLPELASTKLTPKLCVRVADAFVTKYGKYAGWAQTLLFIAELPPQKALVSSDSTSPEDTKSMGKKDKKSQKREIVVPLQGNGFLDIFTGCRIGEIFQ RIGEIFQLFNVTSIGHQPVELWGSLDMDHHQNFVLRGLWYSPPSLRKPEKVFYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	0	1
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	3.5	0.8492
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	3.5	0.8582
AT5G14720			Protein kinase superfamily pro...		Lus10014542 [exp]	5.2	0.8702
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	6.0	0.8888
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	6.2	0.8730
AT5G11430			SPOC domain / Transcription el...		Lus10008108 [exp]	7.0	0.8570
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	8.7	0.8612
					Lus10034709 [exp]	14.0	0.8456
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	20.9	0.8617
AT5G11430			SPOC domain / Transcription el...		Lus10013146 [exp]	22.8	0.8332

Compare expression of checked genes

Lus10018137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.