Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19910 75 / 8e-16 RING/U-box superfamily protein (.1) AT3G47180 70 / 2e-14 RING/U-box superfamily protein (.1) AT3G63530 64 / 4e-12 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT5G67120 62 / 3e-11 RING/U-box superfamily protein (.1) AT2G15530 57 / 3e-09 RING/U-box superfamily protein (.1.2.3.4) AT1G73760 57 / 3e-09 RING/U-box superfamily protein (.1) AT4G34040 55 / 1e-08 RING/U-box superfamily protein (.1) AT3G15070 52 / 1e-07 RING/U-box superfamily protein (.1.2) AT2G37150 50 / 6e-07 RING/U-box superfamily protein (.1.2.3) AT5G42940 49 / 1e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025691 [exp] 235 / 3e-78 AT3G19910 107 / 2e-27 RING/U-box superfamily protein (.1) Lus10029693 [exp] 108 / 1e-28 AT3G19910 105 / 1e-26 RING/U-box superfamily protein (.1) Lus10017385 [exp] 76 / 7e-16 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10010182 [exp] 76 / 9e-16 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10016416 [exp] 68 / 2e-13 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 67 / 3e-13 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031275 [exp] 59 / 1e-10 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10002554 [exp] 56 / 1e-09 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10040389 [exp] 54 / 4e-08 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080900 [exp] 80 / 3e-18 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.005G180300 [exp] 79 / 9e-18 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.005G090800 [exp] 79 / 4e-17 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.007G073200 [exp] 75 / 1e-15 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.003G204500 [exp] 63 / 1e-11 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 62 / 2e-11 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 60 / 9e-11 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 55 / 4e-09 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G100100 [exp] 54 / 3e-08 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 52 / 1e-07 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10018140 pacid=23145244 polypeptide=Lus10018140 locus=Lus10018140.g ID=Lus10018140.BGIv1.0 annot-version=v1.0 ATGGACAACGACGACAACCAACCAACTAATTCGACGGCCAAAAACGAAGTCGATGAACGGAGTAAAGCACCGTTGGCAATACTTAACCAAGTGCACTCCG ACCTAGCGCTGGCCATCGCCCTCCAAGAAGCTGACGTGGCTGCCACATCAGCCAACGCCCCCTTCTTCGACGAAGATGAAGAAGAAGGGGAAGAGGAATG GAGCGACAGTGAAACCGAGAGCGAGGAGGAGTATGAGAACGAGTACGAGTTCGATAGCCAAGGTCAAGAAGAAGAAATGGAGATGGAGGAAGAGGAGGAG GATGAGATTGACCCGGACGACATGCCGTACGAGGATCTGGTTGCGTTAGGGGAGGTGGTCGGGGAGGAGAAGCGGGGGCTGACGGCGGAGGAGATTTCGG CGGCGGGGTGTTTGAGGAAGAGGAAGTTTGCTGAGGTGGCTGGTGACGTGGAGATGTGTGTGATTTGTCAGGCGGAGTATGAAGAAAAGGAGGCGGAGGA AGTGGTGCAAATTGTTGGGTGCGGGCATGCGTACCATAAGGAGTGCGTGACTAATTGGTTGTTGATTAGGAAGAGTTGTCCTGTATGTGGGTATGAAATT GATACTCCGTCGGCGGCGGCGGCGGTGGGTTGTAAGGAGTGTGGTAATTCCGGTGAGGGAAATGGTGGGAATATCGCCGGTGGTTAG
AA sequence Show only first row Show all	>Lus10018140 pacid=23145244 polypeptide=Lus10018140 locus=Lus10018140.g ID=Lus10018140.BGIv1.0 annot-version=v1.0 MDNDDNQPTNSTAKNEVDERSKAPLAILNQVHSDLALAIALQEADVAATSANAPFFDEDEEEGEEEWSDSETESEEEYENEYEFDSQGQEEEMEMEEEEE DEIDPDDMPYEDLVALGEVVGEEKRGLTAEEISAAGCLRKRKFAEVAGDVEMCVICQAEYEEKEAEEVVQIVGCGHAYHKECVTNWLLIRKSCPVCGYEI DTPSAAAAVGCKECGNSGEGNGGNIAGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19910			RING/U-box superfamily protein...		Lus10018140 [exp]	0	1
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	9.5	0.8632
AT3G26350			unknown protein		Lus10006464 [exp]	11.2	0.8625
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	16.0	0.8598
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	18.0	0.8578
AT3G20650			mRNA capping enzyme family pro...		Lus10010478 [exp]	19.5	0.8514
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	21.2	0.8473
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	27.9	0.8386
AT5G22870			Late embryogenesis abundant (L...		Lus10021404 [exp]	27.9	0.8455
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	30.1	0.8493
					Lus10024104 [exp]	33.0	0.8376

Compare expression of checked genes

Lus10018140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.