Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21730 910 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 768 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 754 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G39050 652 / 0 Kinesin motor family protein (.1) AT2G21380 638 / 0 Kinesin motor family protein (.1) AT3G10180 324 / 1e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 291 / 1e-83 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G66310 283 / 2e-79 ATP binding microtubule motor family protein (.1) AT1G18370 281 / 3e-79 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G51150 281 / 4e-79 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025688 [exp] 1841 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016236 [exp] 751 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 741 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017969 [exp] 649 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 644 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 495 / 9e-158 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 454 / 8e-141 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10010441 [exp] 326 / 1e-93 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 325 / 9e-93 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081300 [exp] 1299 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G060400 [exp] 860 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 847 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G122100 [exp] 647 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 643 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 328 / 5e-94 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G136600 [exp] 297 / 3e-85 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.014G013300 [exp] 286 / 4e-82 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G014800 [exp] 288 / 2e-81 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G116900 [exp] 287 / 3e-81 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10018145 pacid=23145229 polypeptide=Lus10018145 locus=Lus10018145.g ID=Lus10018145.BGIv1.0 annot-version=v1.0 ATGTCATCATCAGCAGGGAGGTCGGTGCGGAGCTCAATCTCGCCGTTCCGCTCTAGGAAGTCTCATGCGCAGCGTCCTCCGCCGTCGGCTCCGTCAGTCA CTAAGCACGGGGGAAGGGCGTCAACTCCTCCTTCGGTGAGCTCTTCTTCTTGTTCGTCTTCGTCCAGGCCTCAGTCGAGGTTTTCGAGTTCGACTACGGC TGTCAGTCAAGGTCCGGCTCCTGACGATGCTAGCAGGGCGAGGGAGAATGTGACGGTTACGGTTAGGTTTCGGCCTCTCAGTAATAGAGAGCTTGGCAAG GGTGACGAGGTGGCTTGGTATGCAGATGGTGACTATACTGTGAAGAATGAGTATAATCCTTCGATTGCTTATGGTTTTGACAGAGTCTTTGGTTCCGCAA CGACAACTCGTCATGTATATGATATTGCTGCTCAGCATGTTGTGAGTAATGCGATGCAGGGTGTGAATGGTACAATTTTCGCTTATGGAGTTACTAGTAG TGGAAAGACTCACACAATGCATGGGGAGCAGAAATCACCTGGAGTAATTCCATTAGCAGTGAAAGATGTTTTTGGACTTATACAAGAGATGCCCGGAAGG GAATTTCTGCTTCGGGTTTCATATTTGGAAATCTACAATGAGGTAATCAATGATTTGCTTGACCCAACAGGACAAAACTTGAGAATACGAGAAGATCCAC AGGGAATTTATGTAGAAGGGATAAAAGAGGAAGTTGTCTTGTCACCAGCTCATGCCCTATCTTTGATAGCGACTGGTGAAGCACATAGGCACGTGGGCTC GAATAATATCAATATTCTAAGCAGCCGGAGCCACACTATATTCACTCTGACTATTGAAAGCAGCCCGAGTGACGAAAATCTTGGGGAAGAAGATGTCAGG CTTTCACGATTGCACTTAATTGATCTTGCAGGATCTGAAAGTTCCAAGTCTGAAACTACTGGTATGCGCAGAAAAGAGGGATCTTATATTAATAAAAGTC TGCTTACTCTTGGCACAGTTATTTCTAAATTGACCGATACAAAGGCGACCCATGTTCCATTCCGGGATTCAAAACTCACACGTTTATTGCAGTCATCACT CAGTGGACATGGAATGGTTTCTCTTATCTGCACTGTTACACCTGCTTCTAGCAATAGTGAAGAGACGCACAACACACTGAAGTTTGCTCACCGTAGCAAG CATGTGGAGATTAAAGCCTCTCAGAATAAGATAATTGATGAGAAATCTCTCATAAAGAAGTATCAGAAAGAAATCTCTACTTTGAAGCAAGAACTTCAGG AGTTAAAGCGTGGAATGGTGGAGACTCCTCGTACTGCGTCTACTACTGAAGAAGATTTGGTACACTTGAAGCTCCAGCTTGAGGCTGGCCAGGTCAAATT GCAATCAAGACTTGAAGAAGAGGAACAAGCCAAAGAAGCTTTGATGGGAAGGATTCAACGACTAACTAAACTAATATTGGTTTCCACTAAGAATTCCATG CAACCAAGTGCTCCTGAAAGACCAAGTCACCGTAGAAGGCATTCTTTCGGGGAGGATGAGCTGGCATATTTACCAGATAGAAAACGTGAGTATATCATGG AGGACGATGCAGGAAGCTGTGCCTCTGAGCTTTCGGCGGATGGAAGGGATGATATAGGTAGCTTAGATGATTTGGTGAAGGATTACAGAAGAAGCAGGAG AAGGGGGATGCTTGGGTGGTTTAAACTGAAGAAGCCTGAATACATGGTTGGATCATCAGTAAGTGCTGATACCGAGAGCCTTGATAGTGTGTCATCCGCA TCTGGTTCTAAATCGTCTCAGAACCGGGTAACATTTAGTGATGTGAAGGATGGACAAAGGAAATCTGTCGGTAGAAAGACAGATGACAATACAATGATCG ATTCATTCCCAGAAAGGACACAGGCAGGTGAACTCTTTAGTGCTACTGTTGGAGGTCGTCACTTACCACCGTCTGGTACCACAATCACAGATCAAATGGA TCTGCTCAGAGAGCAGGTTAAAATGTTAGCTGGGGAGGTTGCATTTTCTACTAGCTCGTTGAAAAGATTGTCAGAGAAAGTATCTTCTCATCCCGAAGAT TTAAAACTTAAGGATCAAATGAAGAAACTGAAAGAGGAGATTAGTGAAAAGAGGCGTCAGATGCAAATTCTAGAACAGCGTATGCTTGGATCTATTGGAA TGACTACTCTTAACAGCAATGAAATGTCAGAGGCTTTATCCAACGTTACAACCCAGCTGAACGAAAAAATGTTCGAACTTGAGATTAAGTCAGCCGACAA CAGAATACTTCAGGAGCAACTACAGCTGAAGGCATCAGAGAACATGGAGCTGCAAGAGACGATTCTTCTGCTGAGGCAACAGCTAAGTTCTTCATCAGAC AGGGGTTCTTGCCTTCAACAGGATGCAGAATCGTACGATGAGAGTTATTTCGACGAAAGTACACCGAAAAGCGTCATGAGTATGAACAGAGCATTTTCAC ACAATGAGTCACGGCTATGCAACAGCTCTCAGGCTACTGAAATTGAGAACCTGAAGCAGGAGAAGCTAAAGCTAATTGAAGAAAAAGTGCGACTTGATAT TGAATGTCAGAAACTTGCGGAGGAAGCATCGTATGCAAAAGAACTAGCGGCAGCAGCAGCAGGTGAGCTCCGGGACCTAGCTGAAAAAGTGACAAAGCTT TCTTATCAGAACTCTCAGCTTGTGACTGAGCTAAGCGATGCAAAAGAGGCGATTCGAAGATCAACCAGTTCTCGAGGCTCCCTTCCGTTGGACTCGAAAC AGAATACCTCGAACTTGCACAGATACGATAGTGGACGCATTACTAGGAAAGCAGAGGATGGTGTTCTGATCGAAGAGTTGCGGAAGGAATTAACTGTAAG ATGCCAAAGAGAAGCTTCCTTAGAAGCTGAACTTTCCGACAGAGAAAGAACAGAAGCTGAGCTACGAGAAAGACTCAACGAATCAAATCAGCACGAACAA GAGTTGGAGGATAAGCTTTCCAATATGTGGGTGCTGGTCTCAAAGCTGAGAGATTCTGCTCAGAAAACTGAAGACAAAACAATAATCGGACGTGAAAATG GGTTCCCACTTTCCAATGGTCACTCCCACAACAGTACCAATGTCGATGCCACGAGCAACTCAGAAGGGTTAAAATCAAACCTCGAGAAAGAACGAAGACG ATGCAAGGAACTAGAACGTCTAGTTTCGAAGCTAAAGGGAGAAGATATACAGAATCTTGATCCATCAGCACTCGACGAACTCCAGAATTTCCACCTTGGA GCCATAACCAAAATCTGTCATGCAAAGAAATTGGCAGTTTTGGAACCACAACACATAAAAGAACATTTCGGAGTCGGACGCAACAAAACTAAAGGGGTCT ATGCTGATGCATTCCCTTCTAACTAA
AA sequence Show only first row Show all	>Lus10018145 pacid=23145229 polypeptide=Lus10018145 locus=Lus10018145.g ID=Lus10018145.BGIv1.0 annot-version=v1.0 MSSSAGRSVRSSISPFRSRKSHAQRPPPSAPSVTKHGGRASTPPSVSSSSCSSSSRPQSRFSSSTTAVSQGPAPDDASRARENVTVTVRFRPLSNRELGK GDEVAWYADGDYTVKNEYNPSIAYGFDRVFGSATTTRHVYDIAAQHVVSNAMQGVNGTIFAYGVTSSGKTHTMHGEQKSPGVIPLAVKDVFGLIQEMPGR EFLLRVSYLEIYNEVINDLLDPTGQNLRIREDPQGIYVEGIKEEVVLSPAHALSLIATGEAHRHVGSNNINILSSRSHTIFTLTIESSPSDENLGEEDVR LSRLHLIDLAGSESSKSETTGMRRKEGSYINKSLLTLGTVISKLTDTKATHVPFRDSKLTRLLQSSLSGHGMVSLICTVTPASSNSEETHNTLKFAHRSK HVEIKASQNKIIDEKSLIKKYQKEISTLKQELQELKRGMVETPRTASTTEEDLVHLKLQLEAGQVKLQSRLEEEEQAKEALMGRIQRLTKLILVSTKNSM QPSAPERPSHRRRHSFGEDELAYLPDRKREYIMEDDAGSCASELSADGRDDIGSLDDLVKDYRRSRRRGMLGWFKLKKPEYMVGSSVSADTESLDSVSSA SGSKSSQNRVTFSDVKDGQRKSVGRKTDDNTMIDSFPERTQAGELFSATVGGRHLPPSGTTITDQMDLLREQVKMLAGEVAFSTSSLKRLSEKVSSHPED LKLKDQMKKLKEEISEKRRQMQILEQRMLGSIGMTTLNSNEMSEALSNVTTQLNEKMFELEIKSADNRILQEQLQLKASENMELQETILLLRQQLSSSSD RGSCLQQDAESYDESYFDESTPKSVMSMNRAFSHNESRLCNSSQATEIENLKQEKLKLIEEKVRLDIECQKLAEEASYAKELAAAAAGELRDLAEKVTKL SYQNSQLVTELSDAKEAIRRSTSSRGSLPLDSKQNTSNLHRYDSGRITRKAEDGVLIEELRKELTVRCQREASLEAELSDRERTEAELRERLNESNQHEQ ELEDKLSNMWVLVSKLRDSAQKTEDKTIIGRENGFPLSNGHSHNSTNVDATSNSEGLKSNLEKERRRCKELERLVSKLKGEDIQNLDPSALDELQNFHLG AITKICHAKKLAVLEPQHIKEHFGVGRNKTKGVYADAFPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	0	1
AT4G31880			unknown protein		Lus10018332 [exp]	1.0	0.9536
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	2.4	0.9481
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	4.7	0.9484
AT4G10710		SPT16	global transcription factor C ...		Lus10039410 [exp]	7.7	0.9298
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	7.7	0.9356
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	8.2	0.9255
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	8.9	0.9380
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	9.7	0.9411
AT3G53440			Homeodomain-like superfamily p...		Lus10002159 [exp]	10.4	0.9096
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	10.6	0.9155

Compare expression of checked genes

Lus10018145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.