Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77480 456 / 4e-159 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 449 / 8e-157 Eukaryotic aspartyl protease family protein (.1) AT4G33490 414 / 1e-142 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 306 / 1e-98 Eukaryotic aspartyl protease family protein (.1.2) AT3G02740 133 / 3e-34 Eukaryotic aspartyl protease family protein (.1) AT1G05840 130 / 3e-33 Eukaryotic aspartyl protease family protein (.1) AT1G65240 130 / 3e-33 Eukaryotic aspartyl protease family protein (.1) AT5G22850 130 / 4e-33 Eukaryotic aspartyl protease family protein (.1) AT5G36260 129 / 1e-32 Eukaryotic aspartyl protease family protein (.1) AT2G36670 127 / 6e-32 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025687 [exp] 765 / 0 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 409 / 2e-139 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 406 / 3e-139 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 323 / 3e-108 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10042982 [exp] 314 / 1e-101 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 236 / 2e-72 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 131 / 2e-33 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020201 [exp] 130 / 6e-33 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 130 / 6e-33 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179900 [exp] 508 / 1e-179 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 502 / 5e-177 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.005G069600 [exp] 401 / 1e-137 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 387 / 5e-132 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 370 / 1e-125 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G053300 [exp] 305 / 4e-98 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 138 / 4e-36 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 130 / 6e-33 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 126 / 1e-31 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 126 / 4e-31 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10018146 pacid=23145241 polypeptide=Lus10018146 locus=Lus10018146.g ID=Lus10018146.BGIv1.0 annot-version=v1.0 ATGATGGGGAAAAGCTCGACGTCATCATCCATGGTGGTGGTAAAGGTTGCAACTTTGATTGCTCTGATCATTGCCTTGACGGCGTCGTTTCAACGCTGTT CTGCGGCAAAGACGACTGGCTTTGGGCTGGGGTTTCTGGGTCGTAATTTGAAGAAGACAGCCGACAATACACTTGGCGACGCCAGTGTCTTCCCCGTCAG TGGCAATGTTTACCCTCTTGGGTACTACTCTGCGTCAATAAGCATAGGCAATCCACCAAAGGTCTTCGATTTGGACATCGACACCGGCAGCGACATCACT TGGGTCCAATGTGATGCCCCTTGCACCGGCTGCACCAAGCCGTTGCAAAGTCTTTACAAGCCTAGGAACAATCTGGTACCCTGTTCAGACACCTTATGCG CCTCGGTTCAACCGACCGGAAAAGTCAACTGTCCGAAACCCGACGAACAGTGTGACTACGTGGTTCAATACGCCGATCAAGGCTCGTCCCTTGGCGTGCT GGTCCAAGACAACTTTCCTCTCCGCTTGACCAATGGCACCTTATTTAGCCCCCGCCTAGCATTTGGTTGTGGATATGATCAGAAGAATCCGAGCCCGACA TCTACTTCCACAGCAGGAGTCCTGGGCCTCAGTAATAGCGAAGCGAGCATTAACTCGCAACTGCAAAAAACGGGTCTGGTACAGAATGTGATTGGCCACT GTTTTAGCGGACAAGGGGGCGGATATCTTTTCTTTGGAAACTCTCTCGTACCTTCTTCTGGCGTAAGCTGGACTCCGATGTTGCATGATGCTCCGGACAA ACACTATTTGGCTGGGCCAGCAGAACTGGTCTTTAGCGGGAAGTATACCGGTCTGAAGGGGCTACAATTCATTTTCGACAGTGGCAGCTCGTTCACTTAC TTCAATTCTGTGGTTTACGAAGCCGCCCTTGATATGATAAAGAAAGACTTGAATGGAAAGCTTAAAGATGCACCGGAGGAGCCGGCACTTGATGTCTGCT GGAAAGGCTCGAAACCATTCAAGTCTCTGGACGATGTCAAGGGACACTTCAAACCATTGGCTCTTAGCTTTACGAGATCCAAGAATGGTCAGCTTGAGGT ACCACCAGAGAACTACCTGATCGTGACGAAAAATGGGAATGTGTGCTTGGGGATCCTTAATGGCAGCGAAGTTGGACTGGGGAACTTAAATGTAGTTGGC GACATTTCCATGCAAGACAAGCTGGTGATCTACGACAACGAGAAGCATCGAATGGGATGGATACCTTCTAACTGCAAGAAACTTACAAAGTCCTGA
AA sequence Show only first row Show all	>Lus10018146 pacid=23145241 polypeptide=Lus10018146 locus=Lus10018146.g ID=Lus10018146.BGIv1.0 annot-version=v1.0 MMGKSSTSSSMVVVKVATLIALIIALTASFQRCSAAKTTGFGLGFLGRNLKKTADNTLGDASVFPVSGNVYPLGYYSASISIGNPPKVFDLDIDTGSDIT WVQCDAPCTGCTKPLQSLYKPRNNLVPCSDTLCASVQPTGKVNCPKPDEQCDYVVQYADQGSSLGVLVQDNFPLRLTNGTLFSPRLAFGCGYDQKNPSPT STSTAGVLGLSNSEASINSQLQKTGLVQNVIGHCFSGQGGGYLFFGNSLVPSSGVSWTPMLHDAPDKHYLAGPAELVFSGKYTGLKGLQFIFDSGSSFTY FNSVVYEAALDMIKKDLNGKLKDAPEEPALDVCWKGSKPFKSLDDVKGHFKPLALSFTRSKNGQLEVPPENYLIVTKNGNVCLGILNGSEVGLGNLNVVG DISMQDKLVIYDNEKHRMGWIPSNCKKLTKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77480			Eukaryotic aspartyl protease f...		Lus10018146 [exp]	0	1
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	1.7	0.9013
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10012196 [exp]	2.8	0.8833
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10029882 [exp]	7.7	0.8681
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	7.7	0.8975
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	7.9	0.8804
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	9.2	0.8823
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	9.8	0.8903
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	12.4	0.8605
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	14.3	0.8733
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	16.1	0.8826

Compare expression of checked genes

Lus10018146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.