Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26410 206 / 2e-62 TRM11, AtTRM11 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018149 [exp] 290 / 2e-94 AT3G26410 731 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1) Lus10025686 [exp] 128 / 2e-10 AT3G26410 540 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207000 [exp] 234 / 5e-73 AT3G26410 695 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1) Potri.003G022701 [exp] 49 / 1e-07 AT3G26410 93 / 6e-24 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018147 pacid=23145234 polypeptide=Lus10018147 locus=Lus10018147.g ID=Lus10018147.BGIv1.0 annot-version=v1.0 ATGGGGTGGTATTTCTACGTCTTCTTCCATAGACTGCTGGATTACATAAGACAAGAAGTGGAGTCTCTAGCTGAACTCTTTCATCTTGAATCAAACGGTG AGCCATTGGAGTGGAGGGTTCCCGAGAACCACCATGTAGATTCTCGTTTCCGTTTCGTCAATCTGCCTTCTGAGGATGTCGCTCGAGATATTTCAAACCG GAGTTTGCTTGTGAAAGGGATGTATGAGCTTTGGGGTGAAGGAAGCAGTTATGAAGAACTAGAACAGGCTGTTAAGAGCTTTCCAGACAAGCGGAAATTG CCATACTTGAGTTCCGAAACTACTTTCACGATAACAGTTGACAGATTTGGGAAAGTGATCAGCTTCGACAAGAAGAGAAACCGTATTCAGCAACTAGTTT ATATCCCTTTCACGGGTGGAGTTACCTTGAAACATCCAGAACATAGATTCTGGCTCATGGTGACTGATGACTACGGAGGCAACAACGGACTGCCACCAGG TGCTGATATTGATATTAGAGTAGTTCGAGATGGCCATGGCCGTGATCGCAATGTTTGGAGCAATTTCAAGCAGGAATTTATGCCCTTTTATTCAGTCTTT GCTAATAGCAAGATGATGCAAGAACAGAATATTTCAAGTTCAGGTCTCAAATCCGAGGCCAAAAGCTCCTCAAGGGAGTCATCCCTACACAGTCCCCTAC GAAAAGAGAACCGATCACATACCATCGACCGCACCATACAGCCTCGTAGAATGCGTCCACGATCTTCTCGACCTCACCGTGAAGATGCATGGGATGGGCG GCATGATAGTGTACTTCTACCCGGTGCTATGATCCTTAGCTCACGATACAGCCGTGTTTTACTAACCATGGTGAAGAGTAGTCCTTACACCGAAGAGGTG GCCTCGAAAGCTAAGGCGTTGCATGCCGGCTTCCGGGAGAATCATGTGAAGTGGATGGAGGATGGGAATCTGCATTCCTCTGTTTTCTGTGCAGCTGATC AGCTGACTATGGCGGGTGATAATACCAAGTATGTCTAG
AA sequence Show only first row Show all	>Lus10018147 pacid=23145234 polypeptide=Lus10018147 locus=Lus10018147.g ID=Lus10018147.BGIv1.0 annot-version=v1.0 MGWYFYVFFHRLLDYIRQEVESLAELFHLESNGEPLEWRVPENHHVDSRFRFVNLPSEDVARDISNRSLLVKGMYELWGEGSSYEELEQAVKSFPDKRKL PYLSSETTFTITVDRFGKVISFDKKRNRIQQLVYIPFTGGVTLKHPEHRFWLMVTDDYGGNNGLPPGADIDIRVVRDGHGRDRNVWSNFKQEFMPFYSVF ANSKMMQEQNISSSGLKSEAKSSSRESSLHSPLRKENRSHTIDRTIQPRRMRPRSSRPHREDAWDGRHDSVLLPGAMILSSRYSRVLLTMVKSSPYTEEV ASKAKALHAGFRENHVKWMEDGNLHSSVFCAADQLTMAGDNTKYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018147 [exp]	0	1
AT5G38760			Late embryogenesis abundant pr...		Lus10026292 [exp]	6.3	0.9398
					Lus10015895 [exp]	9.5	0.9571
AT3G28880			Ankyrin repeat family protein ...		Lus10005246 [exp]	13.0	0.9288
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	15.4	0.9514
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	19.4	0.9508
AT2G27250		AtCLV3, CLV3	CLAVATA3 (.1.2.3)		Lus10013340 [exp]	20.4	0.9506
					Lus10027902 [exp]	22.5	0.9497
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10026295 [exp]	25.8	0.9494
AT1G21090			Cupredoxin superfamily protein...		Lus10029783 [exp]	27.1	0.8566
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	28.1	0.9463

Compare expression of checked genes

Lus10018147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.