Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44130 192 / 6e-58 Eukaryotic aspartyl protease family protein (.1) AT4G33490 172 / 3e-50 Eukaryotic aspartyl protease family protein (.1.2) AT1G77480 167 / 5e-48 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 124 / 3e-32 Eukaryotic aspartyl protease family protein (.1.2) AT2G36670 62 / 1e-10 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 62 / 2e-10 Eukaryotic aspartyl protease family protein (.1) AT1G08210 60 / 8e-10 Eukaryotic aspartyl protease family protein (.1) AT5G43100 59 / 3e-09 Eukaryotic aspartyl protease family protein (.1) AT3G50050 57 / 8e-09 Eukaryotic aspartyl protease family protein (.1) AT3G02740 55 / 4e-08 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018146 [exp] 280 / 8e-92 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 275 / 9e-90 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 173 / 5e-50 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 168 / 1e-48 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 130 / 1e-33 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 93 / 8e-21 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 67 / 4e-12 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 62 / 3e-10 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 61 / 4e-10 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179900 [exp] 202 / 1e-61 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 187 / 1e-55 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.005G069600 [exp] 167 / 4e-48 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 160 / 1e-45 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 155 / 2e-43 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G053300 [exp] 133 / 8e-35 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 67 / 5e-12 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 66 / 9e-12 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 63 / 1e-10 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 60 / 6e-10 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018148 pacid=23145238 polypeptide=Lus10018148 locus=Lus10018148.g ID=Lus10018148.BGIv1.0 annot-version=v1.0 ATGGCAATGTTTACCCTCTTGGGTATGCAAATTTCCGTTCTTGATTTCTGGCCGTTGGAGAGTCTTTACAAGCCTCGCAACAATCTGGTGTCCTGTTCAG ACACCCTATGTGCCGCCATTCACTCGCCCGGAGAACCCAACTGTCCGACACGCGACGAACAGTGTGACTACGAGGTTGAATATGCTGATCAAGGCTCCTC GCTTGGCGTGCTGGTCGCAGACATCTTTCCTCTCCGCCTGACCAATGGCACCTCATTCAGCCTCCGTCTAGGCGTCGGGATTTTCTCCTCCATTTCTGCT GCTCTTCTCTCCCGCTCGATCATCCCACTTCACACTCCTTCCACGGCAGGAGTCCTGGGCCTCGGTAATGGCGAATATACCATTATCTCGCAACTTCAAA AAGCTGGTCTGGTGCAGAATGTTATCAGCCACTGTTTTAGCGGACAAGGGGGCGGATATCTGGTTCTCGGAAACTCTCTCGTACCTTCGTCTGGCGTAAC ATGGACTCCTATGATGCGTGTTGCCTCGGATTTACAATGCCGCCCTCGATTTGATAAAGAAGGATTTGAACAGGAAGCTGATGGACGCACCGGAGGAGAA GGCGCTATTGGTCTGCTGGAAAGCTCGATACCGTTTAAGTCTCTCAATGATGTCAAGGGCTATTTCAAAACATTGGTTCTTAGCTTTACCAGCGGTCAGC TTGAAGTCCCACCAGAGAACTACCTGATTCTAACGGTGAGTACTTATGGAACCCTTTACTGTACTATTGCAAGTCATAAACTAACCGAACTCAGAACTCG AATCCAGCAAAACGGGAATGTGTGCTTGGGGATCCTTGACGGCGGCGAACTTGGACTGGGGGACTTAAACGTAGTTGGCGACATTTTGATGCAAGACAAG CTGGTGATTTACGACAACGAGAACCAGCGAATCGGATGGATACCTTCTGACTGCAAGAAACTTCAAAAGTCCTGA
AA sequence Show only first row Show all	>Lus10018148 pacid=23145238 polypeptide=Lus10018148 locus=Lus10018148.g ID=Lus10018148.BGIv1.0 annot-version=v1.0 MAMFTLLGMQISVLDFWPLESLYKPRNNLVSCSDTLCAAIHSPGEPNCPTRDEQCDYEVEYADQGSSLGVLVADIFPLRLTNGTSFSLRLGVGIFSSISA ALLSRSIIPLHTPSTAGVLGLGNGEYTIISQLQKAGLVQNVISHCFSGQGGGYLVLGNSLVPSSGVTWTPMMRVASDLQCRPRFDKEGFEQEADGRTGGE GAIGLLESSIPFKSLNDVKGYFKTLVLSFTSGQLEVPPENYLILTVSTYGTLYCTIASHKLTELRTRIQQNGNVCLGILDGGELGLGDLNVVGDILMQDK LVIYDNENQRIGWIPSDCKKLQKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44130			Eukaryotic aspartyl protease f...		Lus10018148 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	4.7	0.8859
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030814 [exp]	10.8	0.8095
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	11.6	0.8996
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10002526 [exp]	12.6	0.8622
AT4G02100			Heat shock protein DnaJ with t...		Lus10002438 [exp]	14.0	0.8022
AT1G42430			unknown protein		Lus10021819 [exp]	16.2	0.7829
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	17.7	0.8312
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10034485 [exp]	21.0	0.8334
					Lus10035795 [exp]	21.7	0.8561
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	22.4	0.8615

Compare expression of checked genes

Lus10018148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.