Plant FIBer expression Database

Lus10018149 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26410 700 / 0 TRM11, AtTRM11 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025686
[exp]
654 / 0 AT3G26410 540 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Lus10018147
[exp]
290 / 3e-94 AT3G26410 206 / 2e-62 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G207000
[exp]
732 / 0 AT3G26410 695 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Potri.003G022650
[exp]
155 / 1e-45 AT3G26410 134 / 1e-38 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Potri.003G022701
[exp]
99 / 5e-25 AT3G26410 93 / 6e-24 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01170 UPF0020 Putative RNA methylase family UPF0020
Representative CDS sequence
>Lus10018149 pacid=23145201 polypeptide=Lus10018149 locus=Lus10018149.g ID=Lus10018149.BGIv1.0 annot-version=v1.0
ATGGGGTGGTATTTTTGCGTCTTCTTCCATAGACTGCTGGATTACAGAAGACCAGAAGTTGAGTCTCTAGCTGAGCTCTTTCATCCCGAATCAAACGGCG
AGCATTTGAAATGGAGGGTTCCCGAAAACCACCATGTCGATTCTCCTTTCCATTTTGTCAATCTGCCTTCCGAGGATGTCGCTCGAGATATTGCTAACCG
GAGTATGTTCTCAAGTTCTCTCACTCATTCACAAGTTTTCACCGTCCATAATGACATTCAATTTAAGCCGATTTCGAAATATTCAGGTTTGCTTGTGAAA
GGAATGTATGAGCTTTGGGGTGAAGGAAGCACTTATGAAGAACTAGAGCAGGCTATTAAGAGCTTTCCAGATGAACGGAAATTGCCATACTTGAGTTCTG
AAAGTACTTTCAGGATAACCGTTGATAGCTTTGGGAAAGTGATCAGCTTTGACGAGCAGAATAACCGTATTCAGCAACTAGCTTATATTCCTTTCAAGGG
TAGAGTGAACTTGAAACACCCAGAACATAAATTCTGGCTCATGGAGACTGATGACTACGGAGGCAACAACGGACTGCCACCAGTTGTGGCAAAAAGAATC
TTCTTCGGCCGCGAGATTGGTGGCTCCGACAGGAAGCTTATACCTACTTACCAGCTGAAAAGCCGAACTTATCTCGGACCAACAGCGATGGACGCTGAAA
TGGCCTTCTTGATGGCCAATCAAGCACTCGTCAAGCCTGGGAAACTTGTTTATGACCCTTTTGTTGGGACTGGCAGCATTTTGATCGGTGCTGCTCACTT
CGGAGCCATGACATTAGGTGCTGACATTGATATTAGAGTAGTTCGAGATGGACGTGGCCCTGATCACAATGTTTGGAGCAATTTCAAGCAGTACGGACTC
CCTGACCCAGTTGGCCTTTTAAGGGTTGATAACAACCTTCCTCCATGGCGGCCTGGATTAAAAGAGATTTTCGATGCCATAATCTGCGACCCACCATACG
GAGTCCGAGCCGGAGGCCGCAAATCCGGCGGCCGAAAGCTCCTGAAGGGAATCATCGGACCCTACACCGTCCCAGACGAAAAGAGAAGAGACCACATACC
TTCAACCGCACCGTACAGCCTAGTCGAATGCGTCCACGATTTACTCGACCTCGCTGCAAAGATGCTCGTGATGGGCGGCCGACTAGTCTACTTCTACCCA
GTGCTACGAGAAGAAGAGTCCGTCGAAGTCACCTTCCCAGAACATCCGTGCTTCGAAATGATATCTTCCTCGGAGCAGATCCTTAGCTCTCGATACAGCC
GCGTGTTGCTAACCATGGTGAAGAGAAGTCCATACACCCAAGAGGTGGCCTCGAAAGCTAAGGCGATGCATGCCGATTTCCGGGAGAACCATGTTAAGTG
GATGGAAGATGGGAATCTGCATTCCTCTGTTTTCTGTCCAGCTGATCAGCTGACTATGTCAGGTGATAATTCCAAGTCGTTTAAAGAACTGAAACCTAAA
TACAGAGGGAAGTATGTCTAG
AA sequence
>Lus10018149 pacid=23145201 polypeptide=Lus10018149 locus=Lus10018149.g ID=Lus10018149.BGIv1.0 annot-version=v1.0
MGWYFCVFFHRLLDYRRPEVESLAELFHPESNGEHLKWRVPENHHVDSPFHFVNLPSEDVARDIANRSMFSSSLTHSQVFTVHNDIQFKPISKYSGLLVK
GMYELWGEGSTYEELEQAIKSFPDERKLPYLSSESTFRITVDSFGKVISFDEQNNRIQQLAYIPFKGRVNLKHPEHKFWLMETDDYGGNNGLPPVVAKRI
FFGREIGGSDRKLIPTYQLKSRTYLGPTAMDAEMAFLMANQALVKPGKLVYDPFVGTGSILIGAAHFGAMTLGADIDIRVVRDGRGPDHNVWSNFKQYGL
PDPVGLLRVDNNLPPWRPGLKEIFDAIICDPPYGVRAGGRKSGGRKLLKGIIGPYTVPDEKRRDHIPSTAPYSLVECVHDLLDLAAKMLVMGGRLVYFYP
VLREEESVEVTFPEHPCFEMISSSEQILSSRYSRVLLTMVKRSPYTQEVASKAKAMHADFRENHVKWMEDGNLHSSVFCPADQLTMSGDNSKSFKELKPK
YRGKYV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G26410 TRM11, AtTRM11 tRNA modification 11, methyltr... Lus10018149
[exp]
0 1
AT1G26460 Tetratricopeptide repeat (TPR)... Lus10004649
[exp]
4.7 0.9094
AT5G05520 Outer membrane OMP85 family pr... Lus10007514
[exp]
8.1 0.8911
AT3G03060 P-loop containing nucleoside t... Lus10031211
[exp]
8.9 0.8941
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Lus10022870
[exp]
11.8 0.8775
AT4G11420 ATTIF3A1, ATEIF... eukaryotic translation initiat... Lus10031477
[exp]
12.3 0.8788
AT5G15810 N2,N2-dimethylguanosine tRNA m... Lus10005696
[exp]
12.4 0.8713
AT1G16280 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis tha... Lus10029596
[exp]
16.2 0.8429
AT3G27550 RNA-binding CRS1 / YhbY (CRM) ... Lus10022280
[exp]
16.4 0.8718
AT3G61860 ATRSP31, At-RS3... arginine/serine-rich splicing ... Lus10016981
[exp]
16.9 0.8250
AT2G05920 Subtilase family protein (.1) Lus10033431
[exp]
20.2 0.8704

Lus10018149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.