Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 185 / 4e-59 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 179 / 9e-57 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 177 / 3e-56 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 165 / 3e-51 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 107 / 1e-28 Vacuolar iron transporter (VIT) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025685 [exp] 328 / 7e-115 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 169 / 3e-52 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1) Lus10031922 [exp] 166 / 3e-51 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10042804 [exp] 165 / 4e-51 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10031543 [exp] 164 / 9e-51 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10035086 [exp] 163 / 4e-50 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10029776 [exp] 158 / 2e-48 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10015135 [exp] 109 / 8e-30 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069400 [exp] 168 / 3e-52 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 166 / 1e-51 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 166 / 2e-51 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 83 / 9e-19 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 57 / 1e-09 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10018150 pacid=23145250 polypeptide=Lus10018150 locus=Lus10018150.g ID=Lus10018150.BGIv1.0 annot-version=v1.0 ATGGCCCTAAGCTCAACCTCAAAATCCACCCCACCTTCCGATCTTGAATTGGCCATCCCACCACCGCAAAACTACGAGCCAGTCAAGCCAGGGGAAGCAA CGACAAAGGATGCAGTGGTCTCGGTCGACTACTCCAAGCGGGCCCAGTGGCTTCGGGCAGCTGTCCTGGGAGCCAACGACGGACTGCTCTCCACCTCATC GCTAATGATGGGGATCGGAGCAGTCCACAAGGACTCCACCACCATGGTGCTGACAGGCTTGGCCGGCCTGGTGGCCGGAGCCGGCAGCATGGCCACAGGC GAGTTCGTCTCTGTCTACTCCCAACATGACATCCAGGTGGCTCAGCTGGACAGAGAGTTGAACTCGTCTGCAATCTCGAGAGTCGAGTATCTGGAGAGGA AGAAAAAGGAGGTTCCCAGTCCGGCTAAAGCAGCACTGGCCTCGGGTGTTGCTTTCGCTGCAGGAGCCCTGGTCCCGCTGCTTGGAGCCGCTTTCGTGAA GGAGTACACCGTGCGGATCGGGTTGGTTGTCGGGTTGGCCAGCTTGGCACTGTTTGGGTTCGGGTGGTTGAGTGCAGTTTTGGGTGGTGCACCCGTGGTG AAGTCGTCGGTTAGGGTCTTGGTTGGTGGTTGGTTCTCTATGGCGGTTACTTTCGGGCTTGCCAAGGCTATTGGTACTGCTGCTGGGATCAATTAA
AA sequence Show only first row Show all	>Lus10018150 pacid=23145250 polypeptide=Lus10018150 locus=Lus10018150.g ID=Lus10018150.BGIv1.0 annot-version=v1.0 MALSSTSKSTPPSDLELAIPPPQNYEPVKPGEATTKDAVVSVDYSKRAQWLRAAVLGANDGLLSTSSLMMGIGAVHKDSTTMVLTGLAGLVAGAGSMATG EFVSVYSQHDIQVAQLDRELNSSAISRVEYLERKKKEVPSPAKAALASGVAFAAGALVPLLGAAFVKEYTVRIGLVVGLASLALFGFGWLSAVLGGAPVV KSSVRVLVGGWFSMAVTFGLAKAIGTAAGIN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10018150 [exp]	0	1
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10024069 [exp]	1.0	0.9435
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	3.5	0.8883
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	4.0	0.8940
AT3G10910			RING/U-box superfamily protein...		Lus10029037 [exp]	5.7	0.8997
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	13.0	0.8869
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	14.4	0.8943
					Lus10020401 [exp]	15.0	0.8910
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	17.7	0.8778
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	18.3	0.8813
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	18.5	0.8807

Compare expression of checked genes

Lus10018150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.