Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31115 157 / 1e-47 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) AT5G04440 69 / 3e-14 Protein of unknown function (DUF1997) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025683 [exp] 399 / 6e-144 AT4G31115 159 / 1e-48 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10026864 [exp] 172 / 5e-54 AT4G31115 244 / 2e-81 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10038659 [exp] 67 / 4e-13 AT5G04440 345 / 6e-121 Protein of unknown function (DUF1997) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179800 [exp] 155 / 2e-47 AT4G31115 205 / 4e-66 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Potri.008G030300 [exp] 72 / 3e-15 AT5G04440 342 / 5e-120 Protein of unknown function (DUF1997) (.1) Potri.010G230900 [exp] 67 / 2e-13 AT5G04440 330 / 2e-115 Protein of unknown function (DUF1997) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09366 [flax] [poplar] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Lus10018151 pacid=23145174 polypeptide=Lus10018151 locus=Lus10018151.g ID=Lus10018151.BGIv1.0 annot-version=v1.0 ATGGCATACAAACAAGCTGCATTAGGAGGCACAAAGAAAGCACATTTATCTGCTGCAAGAAACAAGAGGCTGAAGCTTCATCATGATCATCCCACCAGCA CATTTATGAGTGAGTTCTTAAGCCTTCCTCAAGGAGTGGAGTCTGCTTTGAACGTCAAGTCTGTCCAGAGCTTTCAAGTTCTCAACGACTCGACTTACCG GTTAGTCCTTCCGGAAGTCCGGCTCCTGAGCTTCGATGCTTGTCCGGTCATGGATCTACGCGTCGCCACAACTTCGCAAGACTTCACCGTCAAGATGCTT TCTTTCAAGTTCCAAGGTGCAGAGGCCATGGAAAGTGCAAATGACCATCTCAAAGGTTTAATGGTGAGCCGTATCATGTGGCACAGCAAAGGTTCCGAGT CGTTTCTCGAGCTCAAGATGCAAATCGACTTAACAATGGAGCTGGTGCAACTGCCTTTCTCGTTGCTGCCTCCTGCAGCTGTTGAAATCCCTGGGAATCT GATAATGGAAGCTGTAGTGGACAATCTGAGTAAAGAGCTGCTGGAGAATGTGGTTGAAAATTATGAGCAGTGGATGATGAGGAAGAAGCAACAAAAGCTT GGGGGAAAAGCATGA
AA sequence Show only first row Show all	>Lus10018151 pacid=23145174 polypeptide=Lus10018151 locus=Lus10018151.g ID=Lus10018151.BGIv1.0 annot-version=v1.0 MAYKQAALGGTKKAHLSAARNKRLKLHHDHPTSTFMSEFLSLPQGVESALNVKSVQSFQVLNDSTYRLVLPEVRLLSFDACPVMDLRVATTSQDFTVKML SFKFQGAEAMESANDHLKGLMVSRIMWHSKGSESFLELKMQIDLTMELVQLPFSLLPPAAVEIPGNLIMEAVVDNLSKELLENVVENYEQWMMRKKQQKL GGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31115			Protein of unknown function (D...		Lus10018151 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10040202 [exp]	4.0	0.7762
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	5.2	0.7815
AT1G13570			F-box/RNI-like superfamily pro...		Lus10020638 [exp]	9.5	0.7329
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017982 [exp]	13.9	0.6565
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	16.2	0.7432
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	17.2	0.7498
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	19.6	0.7278
AT2G25344		LCR14	low-molecular-weight cysteine-...		Lus10014355 [exp]	19.9	0.7119
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10041082 [exp]	21.0	0.7078
					Lus10013649 [exp]	22.2	0.7139

Compare expression of checked genes

Lus10018151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.