Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11040 218 / 5e-66 HSP40/DnaJ peptide-binding protein (.1) AT1G44160 190 / 1e-56 HSP40/DnaJ peptide-binding protein (.1) AT4G28480 151 / 9e-42 DNAJ heat shock family protein (.1.2) AT3G08910 148 / 7e-41 DNAJ heat shock family protein (.1) AT5G01390 148 / 9e-41 DNAJ heat shock family protein (.1.2.3.4) AT1G10350 147 / 3e-40 DNAJ heat shock family protein (.1) AT2G20560 146 / 5e-40 DNAJ heat shock family protein (.1) AT5G25530 144 / 2e-39 DNAJ heat shock family protein (.1) AT2G20550 139 / 4e-38 HSP40/DnaJ peptide-binding protein (.1.2) AT1G59725 136 / 2e-36 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025682 [exp] 639 / 0 AT1G11040 241 / 4e-75 HSP40/DnaJ peptide-binding protein (.1) Lus10029685 [exp] 330 / 7e-109 AT1G11040 257 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10042725 [exp] 322 / 3e-106 AT1G11040 256 / 2e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10017687 [exp] 148 / 1e-40 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 143 / 6e-39 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 143 / 7e-39 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 140 / 9e-38 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10036668 [exp] 140 / 9e-38 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10041254 [exp] 139 / 1e-37 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081700 [exp] 265 / 1e-85 AT1G11040 253 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Potri.005G179400 [exp] 246 / 7e-78 AT1G11040 250 / 2e-79 HSP40/DnaJ peptide-binding protein (.1) Potri.001G211800 [exp] 177 / 9e-52 AT1G11040 197 / 2e-59 HSP40/DnaJ peptide-binding protein (.1) Potri.011G057601 [exp] 154 / 5e-43 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 150 / 2e-41 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 149 / 2e-41 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 147 / 1e-40 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 147 / 3e-40 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 144 / 2e-39 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G136133 [exp] 143 / 3e-39 AT2G20560 260 / 2e-85 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018152 pacid=23145202 polypeptide=Lus10018152 locus=Lus10018152.g ID=Lus10018152.BGIv1.0 annot-version=v1.0 ATGGTGGAAGAACGCCGTAATCCGGACACGACCATCCGTTCGTCCTCACCGTACGATGATGTCGCGAGTCAGAGCTGCGACAGCCGTGGAAACGTTAACA AGAAGTTCACGGTGGAGAAGAGCTGCAAGTGCTTCAAAGCTAAGGATTTCTGGAAGATCTACGGTTCCGTGATCGTGAAATGGTGTCACGTTAAGAGTTC TTCTGTGAATTCGCCACCTTCGTCGCATCCCCCTACGACGCATTTTTCTTCTTCGTCGTCGTCGACTGCTTCTTATGATGGTAATAAGCCCGATTTCGAA GAGGCCGAGCCATCGTCCTCACGGGTCGAAGAAGCGGAGAATCCAAACAGAATATCGAAACAAAAATCGAAAGAGAAAGACGAGTTCCTCCGAACCATAA CCTCTCCTCTTTCGAGAATCGTTAGCAGAATAAGCCCGTCATCTTCCCCTAGATCCAAGAGCGTATCCCAGGTGTCCTCCTTCGTCTCCAGATGCATGAG CAGTCGTAAGACGGCTAGCGCTGATCGTGACCATACTAATGATCACGATCAACAACAGTACTCTAATTCCCCATCGCCCGTCTACTCTCTGTCCAGAGAG GCGAGTCAGAGGGGTGCAAGTACTCCAACGACGACCACGACAACTCCTCGCAATGTCGCGTTCTCAAGGAACGCGAGCCAGAGGAGCACCACACAGATCA TGTTCTCGAATTCGACCGGTCGAAGGGTAAAGCCTCCGACCGTGCAGAAGAATTTGGAGTGCACACTTGAGGAGTTGTTCTTTGGTTGCACCAAGAAGGT CAAGGTTACTAGAGATGTGCTCACCGATAGAGGGCAAATAGTACAGGAAGAGGAGATACTATCAATCCAAGTGAAGCCAGGTTGGAAGAGAGGAACAAAG ATAACATTCGAAGAAATGGGGAACGAGAGACTCGGAGCTCAGCCAGCAGACGTAAATTTTGTGATCGTGGAGAAAGGACACCCACTGTTTCGACGAGAAG GTGACGACTTGGAGTTAACCATAGAGATCCCTCTAGTGCAAGCTCTAACCGGCTGCGATATCTCGATCCCTCTCATGGGAAACAGCGGAGAGACTATGAA CCTTATGATCCAAGACATAATTTACCCCGGCTACCAGAAGATCATCTCAGGGAAAGGAATGCCGAAATCGAAAGAGGAAGAAGAAGAAGGCGGGAGAGGC GACCTAAGAGTTTTGTTCTTGGTTGAGTTCCCGACCAAATTGACCGAAGAACAGAGATCAGAATTTGTTAGCATTTTAGAGGGTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10018152 pacid=23145202 polypeptide=Lus10018152 locus=Lus10018152.g ID=Lus10018152.BGIv1.0 annot-version=v1.0 MVEERRNPDTTIRSSSPYDDVASQSCDSRGNVNKKFTVEKSCKCFKAKDFWKIYGSVIVKWCHVKSSSVNSPPSSHPPTTHFSSSSSSTASYDGNKPDFE EAEPSSSRVEEAENPNRISKQKSKEKDEFLRTITSPLSRIVSRISPSSSPRSKSVSQVSSFVSRCMSSRKTASADRDHTNDHDQQQYSNSPSPVYSLSRE ASQRGASTPTTTTTTPRNVAFSRNASQRSTTQIMFSNSTGRRVKPPTVQKNLECTLEELFFGCTKKVKVTRDVLTDRGQIVQEEEILSIQVKPGWKRGTK ITFEEMGNERLGAQPADVNFVIVEKGHPLFRREGDDLELTIEIPLVQALTGCDISIPLMGNSGETMNLMIQDIIYPGYQKIISGKGMPKSKEEEEEGGRG DLRVLFLVEFPTKLTEEQRSEFVSILEGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10018152 [exp]	0	1
					Lus10018645 [exp]	1.0	0.7745
AT1G05820		ATSPPL5	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10001154 [exp]	8.5	0.7076
AT4G18260			Cytochrome b561/ferric reducta...		Lus10042834 [exp]	9.3	0.6904
					Lus10026442 [exp]	12.8	0.7300
					Lus10024749 [exp]	13.5	0.6926
AT3G45850			P-loop containing nucleoside t...		Lus10025275 [exp]	25.3	0.6859
AT2G26730			Leucine-rich repeat protein ki...		Lus10002360 [exp]	33.9	0.6460
					Lus10042473 [exp]	50.1	0.6703
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10032941 [exp]	53.0	0.6418
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	60.8	0.6683

Compare expression of checked genes

Lus10018152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.