Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44170 675 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 579 / 0 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT4G36250 422 / 3e-144 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT3G66658 136 / 2e-34 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 122 / 8e-30 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 119 / 1e-28 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 104 / 1e-23 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 103 / 2e-23 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT2G24270 88 / 3e-18 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT3G48000 88 / 3e-18 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025681 [exp] 892 / 0 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10029684 [exp] 797 / 0 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10042724 [exp] 620 / 0 AT1G44170 605 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 595 / 0 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10037694 [exp] 584 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10002557 [exp] 427 / 1e-138 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10041806 [exp] 399 / 5e-135 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 397 / 2e-134 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031280 [exp] 394 / 6e-133 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179300 [exp] 723 / 0 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.002G081800 [exp] 707 / 0 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G069800 [exp] 621 / 0 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G412900 [exp] 615 / 0 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G259100 [exp] 436 / 2e-149 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 423 / 1e-144 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.008G106000 [exp] 132 / 8e-33 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 117 / 4e-28 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 114 / 5e-27 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.015G070600 [exp] 113 / 8e-27 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10018153 pacid=23145185 polypeptide=Lus10018153 locus=Lus10018153.g ID=Lus10018153.BGIv1.0 annot-version=v1.0 ATGGCGACGACGACCAGTGAGACGGTGATTTTCGGCGAGGTGGAAGCACAGCAGCTAGTCAGGGAGCTGAGAGACTCGTACGGCTCGGGAACGACTCGGA GCTACGACTGGAGAGTGACGCAGCTGAAGAACATCGTGGCGATGTGCGACGAGAGCGAGAGAGACGTCGTCGATGCTCTCCGCAAGGATCTCGATAAGCC TGAACTCGAAGCAACTCTCTACGAGCTCTGTATGATAAAGAATTCATGTAAACTAGCACTCAAGGAACTGAAAACTTGGATGAGATCGGAAAAGGCGAAA ACCTCACTGACGACTTTTCCTTCATCAGCCGAAGTTGTGTCTGAGCCATTTGGAGTTGTATTGATAATTTCTGCTTGGAACTACCCTTTTTATCTATCCA TTGATCCTGTGATTGGGGCTATAGCAGCTGGTAATGCAGTGGTGTTGAAACCATCAGAATTAGCTCCTGCCTCGTCATCTTTGCTTGCTAAAATGTTTGC AAAGTATTTGGATAATTCTTCCATAAAAGTTATAGAGGGCGCTGTTTCTGAAACCTCTGCTCTGCTAGAGCAAAGGTGGGACAAAATAATGTATACAGGC AACGGGAGAGTTGGACGTATTGTGATGGCTGCCGCTGCAAAGCACTTGACTCCTGTCATCATGGAGCTCGGGGGTAAATGTCCAGCGGTTGTCGATTCAG ACATTAATTTACAGGTTGCAGTGAGGCGAATAATTGTTGGCAAATGGGGTAATAACAATGGACAAGCATGCATATCCCCTGATTACATTTTAACAACCAA AGATTTTGCACCGAAACTGGTTGATGCTTTGAAGACAGAACTCGATAGCTTTTACGGGAAGAATCAACTGAACTCGAAGGACTTGTCTCGTATTGTGAAC TCTAACCATTTCACTAGAATATCAAAGCTACTGGATGATGAGAAGGTTTCCGGTAAAATCGTCTATGGTGGTGAACGAGACGAAGCAAATCTGAGAATCG CTCCGACTCTCTTGCTAGATGTTCCGAGGGATGCCTTGATAATGAGTGAAGAGATATTTGGTCCCTTGCTTCCCATCCTGACGTTGAACGATATCAACGA GAGTTTCGATGTGATAAACTCGGGGTTCAAGCCGCTTGCAGCCTATATATTCACCAACAACAAGAAGCTCAAAGAGAAGTTTGTAATGTCAGTCTCTTCA GGGGGTATTGTTGTCAACGACACTACACTTCATCTAGCGGTCCATACTTTACCGTTCGGAGGTGTTGGCGAGAGTGGGGTGGGGTCATACCACGGGAAGT TCTCGTTCGAGGCCTTCAGCCACAAGAAAGCAGTACTCTACCGAAGTTTCTTCGGGGATGCTCCGTTGAGGTACCCGCCTTACACAAGCACGAAACTAAG ATTGATGAAAGCTTTAATGAACGGCGGTTTTGTTGAGATTCTACGTGCCCTGTTTGGTGGATCTAAACCTCCTTATAAGTCTGAATAA
AA sequence Show only first row Show all	>Lus10018153 pacid=23145185 polypeptide=Lus10018153 locus=Lus10018153.g ID=Lus10018153.BGIv1.0 annot-version=v1.0 MATTTSETVIFGEVEAQQLVRELRDSYGSGTTRSYDWRVTQLKNIVAMCDESERDVVDALRKDLDKPELEATLYELCMIKNSCKLALKELKTWMRSEKAK TSLTTFPSSAEVVSEPFGVVLIISAWNYPFYLSIDPVIGAIAAGNAVVLKPSELAPASSSLLAKMFAKYLDNSSIKVIEGAVSETSALLEQRWDKIMYTG NGRVGRIVMAAAAKHLTPVIMELGGKCPAVVDSDINLQVAVRRIIVGKWGNNNGQACISPDYILTTKDFAPKLVDALKTELDSFYGKNQLNSKDLSRIVN SNHFTRISKLLDDEKVSGKIVYGGERDEANLRIAPTLLLDVPRDALIMSEEIFGPLLPILTLNDINESFDVINSGFKPLAAYIFTNNKKLKEKFVMSVSS GGIVVNDTTLHLAVHTLPFGGVGESGVGSYHGKFSFEAFSHKKAVLYRSFFGDAPLRYPPYTSTKLRLMKALMNGGFVEILRALFGGSKPPYKSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10018153 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	1.4	0.8445
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	6.5	0.7926
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	8.5	0.8054
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	11.1	0.8164
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	11.7	0.8109
AT4G28240			Wound-responsive family protei...		Lus10018535 [exp]	12.8	0.7873
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10007397 [exp]	13.9	0.7924
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	15.9	0.7868
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	17.6	0.8048
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10022621 [exp]	18.2	0.7543

Compare expression of checked genes

Lus10018153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.