Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34750 97 / 1e-22 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) AT1G30590 84 / 5e-18 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) AT2G39240 79 / 2e-16 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026162 [exp] 119 / 7e-30 AT2G34750 540 / 0.0 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10005693 [exp] 91 / 4e-20 AT2G34750 358 / 2e-116 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10005701 [exp] 91 / 4e-20 AT2G34750 360 / 1e-116 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098500 [exp] 101 / 7e-24 AT2G34750 524 / 5e-180 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05327 [flax] [poplar] RRN3 RNA polymerase I specific transcription initiation factor RRN3
Representative CDS sequence Show only first row Show all	>Lus10018154 pacid=23145184 polypeptide=Lus10018154 locus=Lus10018154.g ID=Lus10018154.BGIv1.0 annot-version=v1.0 ATGGGTGCGCTCCAGTCTGTTCCTTCGGACATGGAGGAGGCTTACAGCAAGATTCTGGGGGTCATGATCCCCCCTGAGCGCCTGGACTCTCATCAGGTGG CAAGACTTTTTGTTTTAAACACGTCGTTGTGGGAATCCGGGCCTGTTACCGTGGAAGCGTGGCTTGAACTAATCGTATCCTTGTTGGTGATGTTCTACGT TTGTGCCTTGGATCCTGAACACTGCGGGCTAAAATTTGCGAATGAGCTTATGGAAATGATGAGTGCGGTTGCTTACCTAGCTAGCTTCTTAGCTCGTGGG AAGTTTCTTCGTCCTGCATTTGTTGCTAGCTTTGTGGAGAGGCTCTTGGATTGGTGTTGGCAACAATGCACAATGCATGATGATGACATCAACCGGGGCT CGATGACGACGTCTACTATTTTGGATTCCAGTCCTTTGGGGTCGCATCAATTGTGGTCGGATCTATCGGGCTTAGATCTATCGAGAGGCTACGGTGGGTT GGGTCAGCTCGACGTGTACTTCCCATTTGCCGCCCCGTGCATGCTGAATTATTCCTACAGTTGTATTTGTTTCGGATTACCGTTCGGAGACTTCGTAGGG CCGAACTACCTGCATTGGGACGATGGGGATGAGGAATTGGTAGCCATTTATGAGCCTGTAAGCGAAGAGTTATTGAACTGTTCAGGTGTCCTTGGACGCT GCGGAGAATATGCAAAGAGGTGTGAACGTGAGGATGAGGAAGGAATCATTCCGGAAGAGGAGAAAACTTGGGTTGAACCACTTACCAATGGCTCTAGCTG GAAACGGCCACCTTTGAGAAGGAAGCAACATGGCCAAGAATCAAAAGAAGAGAAATAG
AA sequence Show only first row Show all	>Lus10018154 pacid=23145184 polypeptide=Lus10018154 locus=Lus10018154.g ID=Lus10018154.BGIv1.0 annot-version=v1.0 MGALQSVPSDMEEAYSKILGVMIPPERLDSHQVARLFVLNTSLWESGPVTVEAWLELIVSLLVMFYVCALDPEHCGLKFANELMEMMSAVAYLASFLARG KFLRPAFVASFVERLLDWCWQQCTMHDDDINRGSMTTSTILDSSPLGSHQLWSDLSGLDLSRGYGGLGQLDVYFPFAAPCMLNYSYSCICFGLPFGDFVG PNYLHWDDGDEELVAIYEPVSEELLNCSGVLGRCGEYAKRCEREDEEGIIPEEEKTWVEPLTNGSSWKRPPLRRKQHGQESKEEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30590			RNA polymerase I specific tran...		Lus10018154 [exp]	0	1
AT3G48200			unknown protein		Lus10002461 [exp]	3.6	0.8857
					Lus10016821 [exp]	4.0	0.8780
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10026513 [exp]	5.2	0.8777
					Lus10036765 [exp]	12.5	0.8808
					Lus10002859 [exp]	13.6	0.8838
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	14.4	0.8808
AT2G16190			unknown protein		Lus10011284 [exp]	16.1	0.8808
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	17.7	0.8808
					Lus10006395 [exp]	19.1	0.8808
AT2G12400			unknown protein		Lus10039991 [exp]	22.6	0.8662

Compare expression of checked genes

Lus10018154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.