Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77490 558 / 0 TAPX thylakoidal ascorbate peroxidase (.1) AT4G08390 479 / 3e-169 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT4G35000 223 / 4e-70 APX3 ascorbate peroxidase 3 (.1) AT1G07890 204 / 5e-63 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT3G09640 200 / 1e-61 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G35970 189 / 6e-57 APX5 ascorbate peroxidase 5 (.1) AT4G32320 119 / 5e-30 APX6 ascorbate peroxidase 6 (.1) AT2G22420 73 / 5e-14 Peroxidase superfamily protein (.1) AT2G18140 71 / 4e-13 Peroxidase superfamily protein (.1) AT4G17690 68 / 2e-12 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025680 [exp] 771 / 0 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10014128 [exp] 220 / 1e-68 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 217 / 6e-67 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10019906 [exp] 205 / 1e-63 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10013537 [exp] 200 / 2e-61 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 199 / 1e-60 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10000180 [exp] 178 / 1e-52 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 158 / 7e-45 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10002916 [exp] 110 / 4e-27 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179200 [exp] 615 / 0 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 542 / 0 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.004G174500 [exp] 229 / 2e-72 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 226 / 3e-71 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.005G112200 [exp] 217 / 1e-67 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.016G084800 [exp] 205 / 1e-63 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G015400 [exp] 204 / 3e-63 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.006G132200 [exp] 201 / 4e-62 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G254500 [exp] 122 / 3e-31 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1) Potri.006G089000 [exp] 75 / 2e-16 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10018155 pacid=23145192 polypeptide=Lus10018155 locus=Lus10018155.g ID=Lus10018155.BGIv1.0 annot-version=v1.0 ATGGCTCACTGTCCATCTCACCTGCAACTATCCAAATCGCCGCAGCATCATTCACCTCCACCACCATTTCAAATGGCTTCTTCAACTCTCAGCACCGCCG CCGCCGCCACGTCCTCTCGCCTCCTCCTCCCTTCCTCCTCCACCACCGCTCGTGCTCACATCCGCCAACACCTCTCAACTTCTTCCACTCACGTCTTCTC TCCTCTCAAAGGCATTCGATCCTCTCCTCTCCCTCCGCTTCGCGCCTTCTCCAACCAGAGGAGGCCGTTGAGCGCGGTCGCTGGTGCGTCTGATCCTGCT CAGTTGAAGAGCGCTAGGGAGGATATCAAGGAGATTCTCAAGTCCAAGTTCTGTCATCCGATTCTGGTTCGATTGGGGTGGCATGATGCCGGGACGTACA ACAAGGACATCGAGGAGTTCCCGAGGAGAGGTGGAGCTAACGGAAGTCTTCGATTCGATATTGAGCTCAAGCACGGTGCAAATGCTGGGCTTGTCAATGC ATTGAGTCTGCTTCAACCTATCAAAGAAAAGTATTCTGGTGTTACCTATGCTGATTTGTTCCAGTTGGCTAGTGCTACTGCCATTGAGGAAGCTGGCGGG CCTAAAATCCCAATGAAATATGGAAGGGTAGATGTCTCTGCTCCAGAGGAATGCCCAGAGGAGGGAAGACTTCCTGATGCTGGCCCCCCAAGTCCTGCCG ATCATTTACGAAAGGTGTTTTACCGAATGGGACTAAATGACAAGGAAATAGTTGCATTGTCTGGTGCACACACCTTGGGAAGGTCCAGACCAGATCGTAG TGGTTGGGGAAAGCCAGAAACTAAGTATACGAAAGATGGGCCTGGTGCACCTGGTGGTCAGTCGTGGACAGCAGAATGGCTGTTGGACAGCAGAATGGCT GAAGATATCAAAGCACAAATAGATGAAGACCTACTTGTACTGCCAACTGATGCTGCTATTTTCGAAGATCCTTCATTCAAGGTGTATGCTGAGAAGTATG CTGAAGATCAGGATGCTTTCTTCAAGGACTATGCTGAAGCCCATGCCAAGCTCAGCAACCTAGGATCTAAGTTCGATCCTCCTGAGGGTATCATATTGGA CGGCGTTCAGGGTGAGAAGTTCGTGGCAGCTAATTACTCGTATGGAAAGAGGGAGTTTTCAGACTCCATGAAGCAGAAGATGCGTGCAGAGTATGAAGCA ATTGGTGGTAGCCCCAACAAGGCTCTTTCGTCTAATTACTTCCTGAACATCATTATTGTCATCTCTGTTCTTGCAGTTTTGACATATCTTTTTGGGAACT AA
AA sequence Show only first row Show all	>Lus10018155 pacid=23145192 polypeptide=Lus10018155 locus=Lus10018155.g ID=Lus10018155.BGIv1.0 annot-version=v1.0 MAHCPSHLQLSKSPQHHSPPPPFQMASSTLSTAAAATSSRLLLPSSSTTARAHIRQHLSTSSTHVFSPLKGIRSSPLPPLRAFSNQRRPLSAVAGASDPA QLKSAREDIKEILKSKFCHPILVRLGWHDAGTYNKDIEEFPRRGGANGSLRFDIELKHGANAGLVNALSLLQPIKEKYSGVTYADLFQLASATAIEEAGG PKIPMKYGRVDVSAPEECPEEGRLPDAGPPSPADHLRKVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAEWLLDSRMA EDIKAQIDEDLLVLPTDAAIFEDPSFKVYAEKYAEDQDAFFKDYAEAHAKLSNLGSKFDPPEGIILDGVQGEKFVAANYSYGKREFSDSMKQKMRAEYEA IGGSPNKALSSNYFLNIIIVISVLAVLTYLFGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	0	1
AT1G32160			Protein of unknown function (D...		Lus10030993 [exp]	2.0	0.9292
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10022844 [exp]	5.2	0.9079
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	5.3	0.9294
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	6.2	0.8965
AT3G04310			unknown protein		Lus10004401 [exp]	6.5	0.9003
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	6.6	0.9228
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	7.1	0.8976
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	7.5	0.9277
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	11.0	0.9058
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	11.5	0.8957

Compare expression of checked genes

Lus10018155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.