Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77510 692 / 0 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G21750 692 / 0 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT3G54960 223 / 4e-66 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT5G60640 215 / 9e-63 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G16110 154 / 4e-41 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G52260 150 / 2e-39 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT1G35620 105 / 2e-24 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G47470 92 / 9e-21 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT2G32920 88 / 1e-18 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 87 / 2e-18 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029681 [exp] 788 / 0 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 787 / 0 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025679 [exp] 682 / 0 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10015305 [exp] 256 / 8e-83 AT1G21750 189 / 1e-57 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10037403 [exp] 235 / 2e-70 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 214 / 1e-62 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 212 / 7e-62 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 157 / 4e-42 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10025792 [exp] 137 / 2e-35 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082100 [exp] 749 / 0 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 720 / 0 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 244 / 5e-74 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 157 / 7e-42 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.019G082400 [exp] 112 / 2e-26 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.008G040100 [exp] 108 / 4e-25 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.013G111400 [exp] 107 / 6e-25 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.010G222100 [exp] 101 / 5e-23 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.014G122800 [exp] 99 / 3e-22 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 97 / 1e-21 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10018156 pacid=23145227 polypeptide=Lus10018156 locus=Lus10018156.g ID=Lus10018156.BGIv1.0 annot-version=v1.0 ATGGCGTCTAGGTTTCCGATCTTCTTCTTCCTCGCCATCTTCGCTCTGATCGCCTCCGTTTCAGCTGCTGAAGAGGCTGCGTCGAAGGAGTTCGTGCTCA CGCTCGACCACTCCAATTTCACCGACACTGTCAGCAAGCACGATTTCATCGTCGTCGAGTTCTACGCCCCTTGGTGCGGCCACTGTAAGAGTCTAGCTCC AGAGTATGAGAAAGCTGCTTCAACGTTGAGCAGTCATGATCCCCAGATTGTGTTGGCGAAAGTAGATGCCAATGAGGAGGCCAACAGGGACCTTGCCACG CAGTATGAGATCAAGGGATTCCCAACGCTGAAAATCTTGAGGAATGGAGGGAAGTTGATTCAGGATTATAAAGGTCCTCGTGAAGCTGATGGTATTGTTG AGTTTTTGAAGAAACAGAGTGGCCCTGCTTCAGCTGAGATTAAATCAGCAGAAGATGCCAGCACCCTTATTGATGAATCTAAGATCATTATTGTTGGGGT GTTCCCGAAGTTTTCCGGTGAGGAGTTTGAGAACTACATGGCTTTGGCAGAGAAGTTGCGCTCTGACTATGAATTTGGTCACACTTCAAGTGCTAAGTTC CTTCCTCGTGGTGAATCTTCAGTGACTGGGCCGTTGGTTAGGCTGTTCAAGCCATTTGATGAGCTCTTTGTTGATTCTAAGGACTTTAGTGCGGATGCTC TGGAGAAGTTCGTTGAGGAGTCCAGCATACCCACCGTCACTGTGTTCAACAGTGACCCAACCAATCACCCATATGTAATCAAATTCTTCAACAGCCCTGA TCCAAAGGCTATGTTGTTTGTGAACTTCACCAACGAGGTTGCTGATTCATTCAAGGCCAAGTACCGGGAAGTCGCTGAACAATACAAGGGACAAGGTATC ATCTTTTTGATTGGAGACGTTGATGCCAGTCAAGGCGCTTTCCAGTTCTTTGGACTTAAAGAAGAACAAGTTCCTCTTGTTATTGTACAAACAAGCGATG GGCAGAAGTTCTTGAAGGCAAACTTGAACGTCGACGATATCGCTCCTTGGCTCAAGGATTACAAGGAAGGCAAAGTTCCAGCATACAAGAAATCCGAACC CATTCCCGAAACTAACAACGAGCCCGTGAAAGTTGTTGTCGCTGATACCCTACAGGATCTATTCTTCAACTCCGGGAAGAACGTTCTCCTCGAGTTCTAT GCTCCATGGTGCGGACACTGCAAGAAACTGGCCCCAATTCTCGACGAAGTTGCTGTGTCCTTCGAGAAGGACTCTACCATCCTCATCGGAAAGATTGACG CGACTGCAAATGATGTTCCCACCGACACATTCGACGTGCAAGGATACCCGACCCTGTTCTTCCGCTCGTCTAGCGGGAACTTGGTGCAGTACGACGGGGA CAGAACTAAAGAAGACATCATCGAATTCATCGAAAAGAACAAGGATTCCGTCGCACAACCGAAGGCCGAGGAGTCGAAGGATGAACCAGCTAAAGATGAG CTCTAA
AA sequence Show only first row Show all	>Lus10018156 pacid=23145227 polypeptide=Lus10018156 locus=Lus10018156.g ID=Lus10018156.BGIv1.0 annot-version=v1.0 MASRFPIFFFLAIFALIASVSAAEEAASKEFVLTLDHSNFTDTVSKHDFIVVEFYAPWCGHCKSLAPEYEKAASTLSSHDPQIVLAKVDANEEANRDLAT QYEIKGFPTLKILRNGGKLIQDYKGPREADGIVEFLKKQSGPASAEIKSAEDASTLIDESKIIIVGVFPKFSGEEFENYMALAEKLRSDYEFGHTSSAKF LPRGESSVTGPLVRLFKPFDELFVDSKDFSADALEKFVEESSIPTVTVFNSDPTNHPYVIKFFNSPDPKAMLFVNFTNEVADSFKAKYREVAEQYKGQGI IFLIGDVDASQGAFQFFGLKEEQVPLVIVQTSDGQKFLKANLNVDDIAPWLKDYKEGKVPAYKKSEPIPETNNEPVKVVVADTLQDLFFNSGKNVLLEFY APWCGHCKKLAPILDEVAVSFEKDSTILIGKIDATANDVPTDTFDVQGYPTLFFRSSSGNLVQYDGDRTKEDIIEFIEKNKDSVAQPKAEESKDEPAKDE L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	0	1
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	1.7	0.9665
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	2.4	0.9651
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	4.2	0.9635
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	4.5	0.9523
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	5.7	0.9619
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	7.5	0.9570
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	8.1	0.9611
AT2G34590			Transketolase family protein (...		Lus10023304 [exp]	9.3	0.9427
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	10.2	0.9576
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10025390 [exp]	10.8	0.9296

Compare expression of checked genes

Lus10018156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.