Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23180 133 / 1e-36 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39490 128 / 9e-35 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT1G57750 123 / 2e-33 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT3G26125 123 / 5e-33 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1) AT2G21910 122 / 9e-33 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT4G32170 121 / 3e-32 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT1G13150 120 / 4e-32 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT1G13140 120 / 4e-32 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT4G39480 119 / 2e-31 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT1G47620 119 / 2e-31 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003756 [exp] 217 / 8e-72 AT2G23180 219 / 1e-68 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10015306 [exp] 260 / 6e-64 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015307 [exp] 187 / 4e-60 AT2G23180 219 / 6e-69 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10025677 [exp] 169 / 6e-50 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022277 [exp] 155 / 5e-45 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002527 [exp] 149 / 1e-42 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002525 [exp] 148 / 3e-42 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022279 [exp] 144 / 1e-40 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10035235 [exp] 134 / 9e-37 AT4G39490 359 / 2e-118 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087000 [exp] 166 / 1e-49 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G086900 [exp] 146 / 2e-41 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G080300 [exp] 141 / 1e-39 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 137 / 4e-38 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 135 / 3e-37 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.008G125300 [exp] 124 / 2e-33 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.010G050100 [exp] 124 / 4e-33 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.015G132800 [exp] 123 / 5e-33 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G092200 [exp] 121 / 3e-32 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.007G072100 [exp] 121 / 4e-32 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018160 pacid=23145239 polypeptide=Lus10018160 locus=Lus10018160.g ID=Lus10018160.BGIv1.0 annot-version=v1.0 ATGGTGGAAAGTCGAGAACAGGGCGAATTGGGAGGAGAAACCGGTAGAGTGGGGATGTCTGACAAGCTCATGAGAGACATTGCGTTCAACATGATCGCAG CGGGGAGAGACACGGTCTCTATCAATCTATCCTGGCTGCTCTGGCTCATTGTTTCACACCCCAACGTCGAGGCAAAAATCCTCGACGAAATAGGTGTGAA TATTGGCAGAAACTGCAACAATTGGAGGCTCTTCAGCGATGAAGAGCTTAACCAGATGGTTTACTTGCATGCCACCGTGTGCGAGGCGCTAAGGCTTTAC CCGCCACTCGCATTTGAGCATCGGACGGCTATAGAGGCAGACACGCTGCCAAGCGGGCATTTTGTCGGGAAAAATGCGACGATTTTGTTTTCGATGTATT CCATGGCGAGGATGGAAAATGTCTGGGGCAAGATTGCATGGAGTTTAAACCGGAGCGGTGGATTAGCGAAGAAGGCGATAAGATTGTTCACGTCCCGTCG TACAAATTCTCAGCGTTTTCGGCTGGACCTAGGGCTTGCTTGGGGAAGAAGATTGCTTTCTGGTATGCCAAGCAAGTGA
AA sequence Show only first row Show all	>Lus10018160 pacid=23145239 polypeptide=Lus10018160 locus=Lus10018160.g ID=Lus10018160.BGIv1.0 annot-version=v1.0 MVESREQGELGGETGRVGMSDKLMRDIAFNMIAAGRDTVSINLSWLLWLIVSHPNVEAKILDEIGVNIGRNCNNWRLFSDEELNQMVYLHATVCEALRLY PPLAFEHRTAIEADTLPSGHFVGKNATILFSMYSMARMENVWGKIAWSLNRSGGLAKKAIRLFTSRRTNSQRFRLDLGLAWGRRLLSGMPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	0	1
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10037202 [exp]	1.4	0.9636
AT1G21510			unknown protein		Lus10018955 [exp]	4.5	0.9568
AT5G61340			unknown protein		Lus10034727 [exp]	5.4	0.9644
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10036728 [exp]	7.3	0.9428
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	8.1	0.9543
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	8.5	0.9571
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10031416 [exp]	10.2	0.9309
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	11.6	0.9511
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10041307 [exp]	12.2	0.9307
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	12.6	0.9289

Compare expression of checked genes

Lus10018160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.