Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 110 / 6e-28 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT1G57750 100 / 3e-24 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT5G58860 99 / 7e-24 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT4G39480 98 / 1e-23 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT2G23180 98 / 2e-23 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT2G21910 97 / 3e-23 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT4G32170 97 / 5e-23 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT1G65340 91 / 4e-21 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G39510 91 / 6e-21 CYP96A12 "cytochrome P450, family 96, subfamily A, polypeptide 12", cytochrome P450, family 96, subfamily A, polypeptide 12 (.1) AT1G47620 91 / 9e-21 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025677 [exp] 340 / 1e-115 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10028047 [exp] 201 / 4e-62 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10018157 [exp] 190 / 7e-61 AT4G39480 115 / 1e-29 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) Lus10025678 [exp] 187 / 1e-56 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015306 [exp] 189 / 2e-55 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022279 [exp] 153 / 1e-43 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 144 / 3e-40 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 144 / 5e-40 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022277 [exp] 144 / 6e-40 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064400 [exp] 133 / 4e-36 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 130 / 3e-35 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 123 / 1e-32 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G087000 [exp] 114 / 1e-29 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 110 / 6e-28 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 100 / 4e-24 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.003G129100 [exp] 94 / 7e-22 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.008G125300 [exp] 92 / 3e-21 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G249700 [exp] 91 / 4e-21 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.012G096800 [exp] 89 / 3e-20 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018162 pacid=23145224 polypeptide=Lus10018162 locus=Lus10018162.g ID=Lus10018162.BGIv1.0 annot-version=v1.0 ATGGCGACAGTACTACTACTACCACCACTTCTCCTCCTCCCATTTCTCATCTCAGTCCTTATGGTTTACTACATCGCCGGCGGCAGAGTAAAGAGGCTAA TCTACATCCTCCGTCGCACCTCGCAAATCCACGACATCATCACCCGTGGCCTCAAGCGTTCGGGTGGCACGTTGAGGTACAATAGTTACCTGCTCGTCAC CAGCGATCCGAGGAACGTTCACCATGTGTTCAGCAAGCGCCACTCGAATTTTTTGAATGGCCCCGAGTCGAAGGAGATGCTCGAAGCGTTGGGAGAAGGT ATATTCAACTCCGATGGCGAATTTGCCCTCTCCCAGCGTCGCATCCTTCATTCACTCCTCGGTTCTCCGGAGTTCGAGGACGTTCTTATGACTACCCTCC GTAAGAACATCGAATCAGGCCTGTTTCCTGTCCTGGACAGGGCTGCCTCTGCGTCGAGGACGGAGCTCGACCTTCAGGATGTGTTCAAGAGGTTCATGTT CGACAACATTTGTACCACGGTGCTCGGATTTGACCCGAATTACCTAACGGTGGACCTAGTTCCCGACCTTCCGTACGCGCGCGGGGCCGCCGCCCCGGCG GGCCCCCCCCCCCCCCCCCCGCCACATCCTTCCGGCATTCTGTTGGAAGTTCCAGAGATGGATAGGGATCGGAGAGGAGAGAAAGCTTCGTAA
AA sequence Show only first row Show all	>Lus10018162 pacid=23145224 polypeptide=Lus10018162 locus=Lus10018162.g ID=Lus10018162.BGIv1.0 annot-version=v1.0 MATVLLLPPLLLLPFLISVLMVYYIAGGRVKRLIYILRRTSQIHDIITRGLKRSGGTLRYNSYLLVTSDPRNVHHVFSKRHSNFLNGPESKEMLEALGEG IFNSDGEFALSQRRILHSLLGSPEFEDVLMTTLRKNIESGLFPVLDRAASASRTELDLQDVFKRFMFDNICTTVLGFDPNYLTVDLVPDLPYARGAAAPA GPPPPPPPHPSGILLEVPEMDRDRRGEKAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	0	1
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10025677 [exp]	1.4	0.9514
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	2.0	0.9316
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10015307 [exp]	2.6	0.9123
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028881 [exp]	4.2	0.9145
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	4.6	0.8861
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	4.9	0.9192
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10015278 [exp]	6.7	0.8953
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10024989 [exp]	8.7	0.8822
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	11.1	0.9178
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	11.6	0.9049

Compare expression of checked genes

Lus10018162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.