Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21810 306 / 1e-94 Plant protein of unknown function (DUF869) (.1) AT3G05270 285 / 6e-87 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 277 / 1e-83 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G19835 159 / 2e-40 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 157 / 1e-39 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 146 / 3e-36 Plant protein of unknown function (DUF869) (.1) AT2G23360 99 / 5e-21 Plant protein of unknown function (DUF869) (.1) AT3G19370 48 / 3e-05 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025674 [exp] 1025 / 0 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 889 / 0 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10042719 [exp] 472 / 4e-157 AT1G77580 386 / 5e-125 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 464 / 8e-154 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012712 [exp] 187 / 2e-51 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10010888 [exp] 184 / 2e-50 AT1G77580 233 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 159 / 5e-40 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 159 / 5e-40 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 157 / 1e-39 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083400 [exp] 605 / 0 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 550 / 0 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 373 / 1e-119 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 364 / 3e-116 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 157 / 1e-39 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 153 / 2e-38 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 124 / 4e-29 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 118 / 4e-27 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 105 / 3e-23 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 103 / 1e-22 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10018164 pacid=23145253 polypeptide=Lus10018164 locus=Lus10018164.g ID=Lus10018164.BGIv1.0 annot-version=v1.0 ATGGAGAAGAGGAAATGGCTGTGGAAGAAGAAACCTTCTGAGAGGAGCAATGGAGAAACTGAGAGTTCTGGTTCAATTTCCTCACATTCTGAGAGATTCT CTGATGATCAGGAAGCAATGAAAGCATCTCCCAATGATGAAAGTCAATCGCCTGAAGTTACCTCGAAAACTTCAGCTGCGGATGAAGAAGTCAACGAAAC CATCAAATGCTTGACAGAGAAGTTATCAGCTGCGCTCGTGAACGTCAGCCAGAAAGACGATTTAGTAAAGCAACACTCGAAAGTTGCTGAAGAAGCTGTT GCAGGATGGGAGAAGGCTGAAAACGACTTGGTAGTTATCAAGGTACAGCTCGAAGCATCAACACATAAGAAATCTCTACTCGAAGATCGAGTTAGCCATC TCGACGGAGCCTTGAAAGAATGCGTTAGGCAGCTCAGACAAGCACGGGATGAGCAGGAAGCAAAGATACACGAGGCAGTTGCTAGCAAAAGTAAAGAATG GGAAGCCATTAAATCTGAACTAGAGAAACAGATTTTTCATCTCAAGACAGAAGCAGAATCTACAAAAAAGCCCGAGTCCCCTACTCTTCGAGCCGATCCT GATTTGTATGACAAGCTCGAATATCTAGAACAAGAGAATGAATCGCTGAGGCATGAGCTTCTGACTCAGTCTGAAGAATTAGAAGTCAGAACGATTGAAA GGGACTTGAGTACTCAAGCGGCTGAAACGGCAAGCAGGCAGCATTTGGAAAGCATTAAGAAGTTGGCGAAGCTCGAAGCTGAATGCCGAAGGCTAAAGAC TGTAGCTTTTCGGTCATCGTCTCCACGCTATGAACATAAAACATCTGCTGCTTCCTCGGTTTATCTCGAGTCTCTTACAACGGATAGCCATTCAGATAGT GGGGATCAAAGGCTCAATGCATTGGATTTGGATACCCGAAAAGCGAGTAACTTTGACACATCAGCACTGATTGCTGAACTTGATCAGTTCAAGAATGGGA AAGCTTCTTATAACAGGAATCTACCTGCATCAGCTGTTGAGATTGATCTAATGGATGATTTCCTCGAAATGGAAAGACTCGCTTCAATGGCCGAGACTGA AAGTCGAAGCAATCACGTTGAGTCAGAAGCGGTTGTGAACCAATCTACTGATGGTGCAGAAATCGCATTGAGAGTTGAGCTCGAGAACGCTATTCGTCAT TCAGCTGAGCTGGAAATCAAGCTGAGTGAGCTGCAAGGAGTGAAAGACGAACTAGAACGTAGCTTGGAGAACACAAAAGCCGAGAAAGCTGAAGTGGAAT CAGGGCTTGTGAGAATGATGGAAGAGAAAGCTCAAGTGGAAAGAAGTTTACAAGAAATGAAGGCAGAGAAATCAGAGATGGAAACTGTTCTGAACAAAAG CCAAGATGAGAATAAGGCTACAGAAAGTTTGCTTAGGGAAGTCGAACTCAAGTTGGAGGAAGTCGAATCTGAGATGTTATCGGCGAGAGAATCAAGAAAA GATATCGAATCTCAACTCATTGGCTTGGAAGCAGAATGTCGTACGATGTCAGCACAGGTTGCCACCTTGGAAACCGAACTCGAGAAGGAAAAGGCTACGT CTGCTGAGTTCAGCATCAAGTATCTGTTTTTGGAGGAAGAACTTTCAAAGAAAAAGGAGGAGACTGAGCAGCAGCAGTCAATGAAGTTGAACAGAGAACC AAAGATTAAACAGGAGGACATAGCTCTGGCAGCTGGGAAGCTTGCTGAATGCCAGAAGACAATACTGTCTCTAGGAAAACAACTCAAATCTCTAGCGACG CTAGAGGACTTCTTGATGGACACGAGCAGCATACCGGAGATCTCATCCGGAGCTTCCTCATCAGCTGCTGCGAGAGTCAGCAATGGTGAGGAACTGTGGA GGTTACATTCTAACGAAACGCACTCTCCTGCAATCGGTTCAAGCTCTTCAAGAGTTGCTGAGACACCTAATAAGCACGATCACCAATCCCCGCCATCAGC ATGTTCTTCAACTTCTTCATCAGCTGTGGTGTCCTCCTCGTTGCATTCCAGTTCGGATAAGAACCGAAATGGGTTTGCCAAGTTCTTCTCGAGGAGCAAG AATGGGATTCAGCTTGAACTTTAG
AA sequence Show only first row Show all	>Lus10018164 pacid=23145253 polypeptide=Lus10018164 locus=Lus10018164.g ID=Lus10018164.BGIv1.0 annot-version=v1.0 MEKRKWLWKKKPSERSNGETESSGSISSHSERFSDDQEAMKASPNDESQSPEVTSKTSAADEEVNETIKCLTEKLSAALVNVSQKDDLVKQHSKVAEEAV AGWEKAENDLVVIKVQLEASTHKKSLLEDRVSHLDGALKECVRQLRQARDEQEAKIHEAVASKSKEWEAIKSELEKQIFHLKTEAESTKKPESPTLRADP DLYDKLEYLEQENESLRHELLTQSEELEVRTIERDLSTQAAETASRQHLESIKKLAKLEAECRRLKTVAFRSSSPRYEHKTSAASSVYLESLTTDSHSDS GDQRLNALDLDTRKASNFDTSALIAELDQFKNGKASYNRNLPASAVEIDLMDDFLEMERLASMAETESRSNHVESEAVVNQSTDGAEIALRVELENAIRH SAELEIKLSELQGVKDELERSLENTKAEKAEVESGLVRMMEEKAQVERSLQEMKAEKSEMETVLNKSQDENKATESLLREVELKLEEVESEMLSARESRK DIESQLIGLEAECRTMSAQVATLETELEKEKATSAEFSIKYLFLEEELSKKKEETEQQQSMKLNREPKIKQEDIALAAGKLAECQKTILSLGKQLKSLAT LEDFLMDTSSIPEISSGASSSAAARVSNGEELWRLHSNETHSPAIGSSSSRVAETPNKHDHQSPPSACSSTSSSAVVSSSLHSSSDKNRNGFAKFFSRSK NGIQLEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	1.4	0.8331
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	2.8	0.7676
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	3.2	0.8028
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10013284 [exp]	3.5	0.7794
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	3.5	0.7904
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	5.2	0.7602
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	8.8	0.7530
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	9.5	0.7471
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038636 [exp]	9.5	0.7589
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	11.0	0.7575

Compare expression of checked genes

Lus10018164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.