Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21790 247 / 9e-82 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025673 [exp] 0 / 1 AT1G21790 404 / 4e-143 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083300 [exp] 263 / 8e-88 AT1G21790 425 / 3e-151 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) Potri.005G178200 [exp] 261 / 3e-87 AT1G21790 392 / 9e-139 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10018165 pacid=23145194 polypeptide=Lus10018165 locus=Lus10018165.g ID=Lus10018165.BGIv1.0 annot-version=v1.0 ATGGCGAGATCAACGGCGAGCCAGAATGAAAACGACAACAAGGTGGGAGCTTTCTTCTTAGCGACTCTGCTTCTGTGGTCAGTATCAGTTGGGTTCGAAA TCCTCTTCAACAAGCGAGCCCAGCTCATCTTCATCGTCGCCGGCGGGATATTCTTCCAGTTAGCCAACTGGGTCATTCGATCCTTGGTCTCTCGTGACCC GCTCTTCGTCAATACTTGCGTCTCCCTCCTCCATTCCTCCGTTACTTCCTCCGCAGTGCTTCTGATTTTGGCTTATCGGATTTCACATGACGGTGCAAAT GAGATATTCGAGCACTCCGAACTCGTTGGAAGTGCATGGCAATGGGCGTACCCTGCCTTATGTTTCTCATCCGGTTACTTTGCATATGATCAGTTGGATA TGCTCCTTTACCGGCTTTATAGTGGCGTCTTTCCTTCCATCCTGGTGCACCATCTAGTCCTTCTCTTGTGCTTCACTCTTGCTCTGTACCGAAATGTCAC GATTAACTATCTCATTCTCACCCTAATCTGCGAGGAAACTGAGACGGATGGCTGGGATTCGCGATGCAAGGAGCAAGATCGTGAAGGTGGAATGGATCCT GAACTGGCTGACATTCACATTCGCGAGAGTGGTGCCTCACGTCCTGATAACCACAAAGCTGGTCAAAGACGCACCGAAGTTCGGAAAGGGTATCGAGTTG CCACTTGCGCTGTTTGGCATGGTTGGGATGAACATACTGAATGCTGGTCTGGGGATGGATTTGTTCAAAGCTTTTCGGCGAGAGCGAAACCTGCAGACGA GTAG
AA sequence Show only first row Show all	>Lus10018165 pacid=23145194 polypeptide=Lus10018165 locus=Lus10018165.g ID=Lus10018165.BGIv1.0 annot-version=v1.0 MARSTASQNENDNKVGAFFLATLLLWSVSVGFEILFNKRAQLIFIVAGGIFFQLANWVIRSLVSRDPLFVNTCVSLLHSSVTSSAVLLILAYRISHDGAN EIFEHSELVGSAWQWAYPALCFSSGYFAYDQLDMLLYRLYSGVFPSILVHHLVLLLCFTLALYRNVTINYLILTLICEETETDGWDSRCKEQDREGGMDP ELADIHIRESGASRPDNHKAGQRRTEVRKGYRVATCAVWHGWDEHTECWSGDGFVQSFSARAKPADE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018165 [exp]	0	1
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	2.0	0.8672
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	6.2	0.8711
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10021839 [exp]	6.9	0.8664
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10038217 [exp]	7.2	0.8370
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	8.4	0.8465
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	10.2	0.8600
AT1G58170			Disease resistance-responsive ...		Lus10042488 [exp]	11.7	0.8238
					Lus10019876 [exp]	15.3	0.8457
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10013630 [exp]	15.8	0.8432
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10024494 [exp]	17.2	0.7812

Compare expression of checked genes

Lus10018165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.