Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44414 139 / 3e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025672 [exp] 176 / 6e-59 AT1G44414 151 / 4e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083100 [exp] 144 / 6e-46 AT1G44414 128 / 8e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018166 pacid=23145216 polypeptide=Lus10018166 locus=Lus10018166.g ID=Lus10018166.BGIv1.0 annot-version=v1.0 ATGTTCTTCTTCTTCGCCGGAGGAGTGAGCCAGCAGGTCCGGCAGGTGCTGAAGCAAAACGCTGGAAAGTGCATCAGCTGCGGCTCCACAGCTGATCTCG TCGATTACGACAAAGTCCTCAAGCTCTTCTTCGTCCCGGTCTGGCGGTGGCCTGGTAAGGAATCCCTACTGCACTGCAACGATTGCAATATCTTCTTCCC CACATCCTTTTCTCCTCCACCCTCGATGATCGGCGAGAGTCTGAGGTGTCGATTCTGTGATCGGTCTGTGCAGGCCGAGTTCAGGTTCTGCCCTTTCTGC GGCTCTGATCTGTGA
AA sequence Show only first row Show all	>Lus10018166 pacid=23145216 polypeptide=Lus10018166 locus=Lus10018166.g ID=Lus10018166.BGIv1.0 annot-version=v1.0 MFFFFAGGVSQQVRQVLKQNAGKCISCGSTADLVDYDKVLKLFFVPVWRWPGKESLLHCNDCNIFFPTSFSPPPSMIGESLRCRFCDRSVQAEFRFCPFC GSDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44414			unknown protein		Lus10018166 [exp]	0	1
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	3.5	0.9374
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	4.1	0.9432
AT2G20560			DNAJ heat shock family protein...		Lus10013981 [exp]	6.0	0.9316
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10010897 [exp]	6.0	0.9242
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	6.7	0.9353
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10002319 [exp]	8.7	0.9278
AT5G07330			unknown protein		Lus10042036 [exp]	9.4	0.9174
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	10.2	0.8391
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	10.9	0.9242
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10013797 [exp]	12.1	0.8142

Compare expression of checked genes

Lus10018166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.