Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18760 74 / 9e-16 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) AT2G29840 73 / 3e-15 RING/U-box superfamily protein (.1) AT5G64920 73 / 4e-15 CIP8 COP1-interacting protein 8 (.1) AT3G13228 72 / 1e-14 RING/U-box superfamily protein (.1) AT3G13430 71 / 3e-14 RING/U-box superfamily protein (.1.2.3) AT1G18770 67 / 3e-14 RING/U-box superfamily protein (.1) AT1G55530 69 / 2e-13 RING/U-box superfamily protein (.1) AT3G46620 69 / 2e-13 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18780 68 / 2e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025671 [exp] 397 / 7e-142 AT3G13228 74 / 4e-15 RING/U-box superfamily protein (.1) Lus10010179 [exp] 74 / 2e-15 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10012819 [exp] 71 / 1e-14 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10030464 [exp] 69 / 9e-14 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10036757 [exp] 67 / 2e-13 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10037170 [exp] 66 / 4e-13 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10020558 [exp] 64 / 1e-12 AT1G18760 56 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10011392 [exp] 65 / 2e-12 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10008874 [exp] 65 / 4e-12 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083001 [exp] 208 / 5e-68 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 102 / 1e-26 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G118000 [exp] 94 / 3e-23 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 88 / 6e-21 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.006G219000 [exp] 82 / 4e-18 AT5G08139 75 / 7e-15 RING/U-box superfamily protein (.1) Potri.001G103900 [exp] 78 / 2e-17 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.001G185200 [exp] 76 / 2e-16 AT3G02340 66 / 2e-12 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 74 / 2e-15 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 73 / 3e-15 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 71 / 7e-15 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10018167 pacid=23145206 polypeptide=Lus10018167 locus=Lus10018167.g ID=Lus10018167.BGIv1.0 annot-version=v1.0 ATGGCTACTACCACCTCCTCCGTCTACGAGTACACCATGTACCAAGCTTCGAAATCCACCACGATCCCCGCCGATTACTTCCCTTCCACGGCCGACGTCG CAGCATTCAACTTCAACCTCCATTTCCGCCACATCCTCCAGCTCCGCTACCCTGAACCGGTCCATATCCAGCTTGACTCAACTTCCCGCTCCTATCTCCT TCCGCGGCGCATGTTTTCGTCGCCATCTGATGGCTTCGATCCTTCGTCCGTCGTGGAGGCGGCGCTCTCTGAGACGGGAGCCACCGCCGACTTCATCGCC GCTATCGTACCGGAAGTCTCGTCGTTCGCGGTCGAGCTGGCGATGGATCCTTGCAATGAAGGCGTTAGTGTGGTGACGATTGTGCTGGCTTTGTTCGTGA TCACTCCGTTTGACGATCGGGAGGCGATTGACCGAGCTTTGAGCGAGCAGGATTTTAGGGATTTGAGGTTTAAGCCTGCGAGTAAGTCGTCCATTGAAGG ACTGAAGAGGTTTACGCTCGATTGCTTGGGGGGCTCGTCCGTCAGGAAGTGTACAGTGTGTTTGGATGAGATGTTGATCGGCGTTCAGGTTGCTTGTTTG CCATGTGAGCATCTATTCCATGGGAGCTGCATCGTTCAGTGGCTGGAGACGAGCCATTTGTGTCCATTGTGCAGGTACGCCATGCCTTAG
AA sequence Show only first row Show all	>Lus10018167 pacid=23145206 polypeptide=Lus10018167 locus=Lus10018167.g ID=Lus10018167.BGIv1.0 annot-version=v1.0 MATTTSSVYEYTMYQASKSTTIPADYFPSTADVAAFNFNLHFRHILQLRYPEPVHIQLDSTSRSYLLPRRMFSSPSDGFDPSSVVEAALSETGATADFIA AIVPEVSSFAVELAMDPCNEGVSVVTIVLALFVITPFDDREAIDRALSEQDFRDLRFKPASKSSIEGLKRFTLDCLGGSSVRKCTVCLDEMLIGVQVACL PCEHLFHGSCIVQWLETSHLCPLCRYAMP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19950			RING/U-box superfamily protein...		Lus10018167 [exp]	0	1
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	7.1	0.7317
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	18.4	0.6875
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019836 [exp]	20.2	0.6538
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10037362 [exp]	22.7	0.6790
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	31.0	0.6709
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	33.0	0.6688
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Lus10012837 [exp]	34.1	0.6741
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10020371 [exp]	35.3	0.6317
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	35.7	0.6734
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	46.9	0.6376

Compare expression of checked genes

Lus10018167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.