Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44350 399 / 4e-138 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT1G51760 281 / 3e-92 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT3G02875 265 / 7e-86 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G56660 262 / 1e-84 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51780 257 / 8e-83 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G54140 254 / 1e-81 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT5G56650 251 / 1e-80 ILL1 IAA-leucine resistant (ILR)-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025668 [exp] 559 / 0 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10010715 [exp] 308 / 3e-102 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 302 / 4e-100 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10030659 [exp] 298 / 2e-98 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 295 / 2e-97 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 295 / 3e-97 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 275 / 3e-89 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 271 / 5e-88 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 257 / 8e-83 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082400 [exp] 466 / 2e-164 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 463 / 9e-163 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.010G035900 [exp] 309 / 9e-103 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.003G045200 [exp] 301 / 5e-100 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 278 / 5e-91 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.012G007400 [exp] 276 / 5e-90 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.016G074100 [exp] 267 / 4e-86 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 264 / 2e-85 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 261 / 3e-84 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10018169 pacid=23145247 polypeptide=Lus10018169 locus=Lus10018169.g ID=Lus10018169.BGIv1.0 annot-version=v1.0 ATGCAGAAACCTTATCTGTCATTCTTCAGAGTCATTCTTCCTAGCGTCCTTCAAGAGCAGAAGCTGGAAGGAGTGGAGTGGGAGCACAAAAGCAAAGTAG ATGGGAAGATGCATGCTTGTGGCCATGATGCCCATGTTGCCATGCTCTTGGGTGCTGCCAACATCTTAAAGACCCGTGAGCACCTTCTCAAGGGAACAGT GATACTGCTGTTTCAGCCGGCGGAGGAAGCCGGAAACGGAGCAAAAAGGATGATCGCCGACGGAGCTCTGGAAGACGTGGAGGCCATTTTCGCACTCCAT GTTTCTCATGAGCATCCCACCTCCGTCATCGGCTCCAGGCCTGGCCCTCTCCCTTCCCGCTGGGGATTCTTCCGTGCTGTCATTACTACACCGCGCCGCT CCTCCGGCTATCCCGTCTTAGCCGCCTCCGCCGCCATCATAAGCTTGCAGGGCATCGTTTCTCGCGAAGCTAATCCTTTGGACTCTCAGGTTGTTTCCGT CACAACGGTTGACGGCGTATCCACCATGCCGGCGGCGACTGAGACTTCCGTCGCACTAGGAGGTACATTCAGGGCATTTTCCAACACAAGCTTCTACCAT CTCCTTCACCGTATACGAGAGGTGATCTTAGAACAAGCAGCGGTGTACAGATGCGAGGCGAAAGTCAATTTCTTCGAGGAGGAATCGACTATCTACCCAC CGACGGTGAACAACGACAGAATGTACGAGCACGTTAAAAAAGTCGCGACCGATCTCCTCGGTCCGGCCAACTTCAGGGTGGTCCCGCCGATGATGGGAGC TGAAGACTTCTCGTTCTACTCGGCCGTGGTCCCCGCGGCATTCTACTACATCGGAATCCGGAACGAGACGTTGGGGTCGACTCACACGGGGCATTCGCCG CACTTCATGATCGATGAGGATGTTCTTCCCATTGGGGCTGCGGCTCATGCTGCTATTGCAGAGCGGTACTTGATAGGGTTCGGATGA
AA sequence Show only first row Show all	>Lus10018169 pacid=23145247 polypeptide=Lus10018169 locus=Lus10018169.g ID=Lus10018169.BGIv1.0 annot-version=v1.0 MQKPYLSFFRVILPSVLQEQKLEGVEWEHKSKVDGKMHACGHDAHVAMLLGAANILKTREHLLKGTVILLFQPAEEAGNGAKRMIADGALEDVEAIFALH VSHEHPTSVIGSRPGPLPSRWGFFRAVITTPRRSSGYPVLAASAAIISLQGIVSREANPLDSQVVSVTTVDGVSTMPAATETSVALGGTFRAFSNTSFYH LLHRIREVILEQAAVYRCEAKVNFFEEESTIYPPTVNNDRMYEHVKKVATDLLGPANFRVVPPMMGAEDFSFYSAVVPAAFYYIGIRNETLGSTHTGHSP HFMIDEDVLPIGAAAHAAIAERYLIGFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	0	1
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	1.4	0.8882
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	1.4	0.8767
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10026125 [exp]	3.6	0.7702
AT1G49000			unknown protein		Lus10042953 [exp]	4.9	0.8487
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	5.9	0.8065
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	9.9	0.7817
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10040656 [exp]	10.1	0.7607
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	11.0	0.8005
AT5G53590			SAUR-like auxin-responsive pro...		Lus10006820 [exp]	11.8	0.6966
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	12.8	0.8145

Compare expression of checked genes

Lus10018169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.