Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08330 142 / 1e-43 unknown protein AT2G17705 46 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025667 [exp] 296 / 3e-104 AT4G08330 166 / 5e-53 unknown protein Lus10025950 [exp] 46 / 1e-06 AT2G17705 202 / 2e-68 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083600 [exp] 172 / 3e-55 AT4G08330 106 / 1e-29 unknown protein Potri.005G178000 [exp] 158 / 7e-50 AT4G08330 138 / 3e-42 unknown protein Potri.005G070600 [exp] 125 / 8e-37 AT4G08330 105 / 3e-29 unknown protein Potri.014G197000 [exp] 98 / 2e-26 AT4G08330 113 / 4e-33 unknown protein Potri.005G107700 [exp] 49 / 6e-08 AT2G17705 197 / 9e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018170 pacid=23145273 polypeptide=Lus10018170 locus=Lus10018170.g ID=Lus10018170.BGIv1.0 annot-version=v1.0 ATGGAGACGTCGACGGCGGTTAGCAGAGAGAATTACCTCAACGGGAATCACCACAGTCAGTCTTTCTCCTCCGCCTCTGCATCCCAGAGACACGTCAACT ACAGCTGTGGCACTTGTGGGTATGAGCTGAACTTAAGCTCCTCGAATCGCAACACCTCGACTATAGGCTCCAAATACGGGAAATCCATAAAGCGAGGGAT CATATCGTTCTTCTACATCGACGAGAGCAGGTTCACCCTTGTCGACGAGCTACAATGCATTCCCTTCTTCTCAAACAGATCGTGGCGCTTGTTTCGGAGA AGAACTAAACTCCTCTGCCGTAAGTGTGGCAACCCGGTTGGCATTGCTTACGATGACTATGAAGCCCCTCCTGATTATCCTCTCGTACCATCAACTGGGT CCGAGTTCTCATCATCGCCAGGCGCCGAAGCAGCTACTACTACTAAACATAGGAAGTACGACATCAAGATTCGATCTTTACAGCCATCCGCAACAATGGA GAGATTTGATAGTACCCCGCATTATCTGTGA
AA sequence Show only first row Show all	>Lus10018170 pacid=23145273 polypeptide=Lus10018170 locus=Lus10018170.g ID=Lus10018170.BGIv1.0 annot-version=v1.0 METSTAVSRENYLNGNHHSQSFSSASASQRHVNYSCGTCGYELNLSSSNRNTSTIGSKYGKSIKRGIISFFYIDESRFTLVDELQCIPFFSNRSWRLFRR RTKLLCRKCGNPVGIAYDDYEAPPDYPLVPSTGSEFSSSPGAEAATTTKHRKYDIKIRSLQPSATMERFDSTPHYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08330			unknown protein		Lus10018170 [exp]	0	1
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10035082 [exp]	2.4	0.7420
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	4.2	0.7641
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10031918 [exp]	4.6	0.7337
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	11.2	0.7148
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	12.7	0.7029
AT2G43250			unknown protein		Lus10040469 [exp]	18.4	0.7186
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10020222 [exp]	18.6	0.6411
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	18.7	0.6781
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034083 [exp]	23.0	0.6697
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006092 [exp]	35.6	0.6614

Compare expression of checked genes

Lus10018170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.