Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02230 201 / 3e-62 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02340 196 / 2e-60 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02250 187 / 8e-57 ATPP2-B2 phloem protein 2-B2 (.1) AT5G24560 177 / 6e-54 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02240 178 / 3e-53 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT1G09155 177 / 3e-53 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02360 171 / 3e-51 ATPP2-B10 phloem protein 2-B10 (.1) AT1G80110 168 / 4e-50 ATPP2-B11 phloem protein 2-B11 (.1) AT1G56240 166 / 6e-49 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 160 / 5e-47 ATPP2-B14 phloem protein 2-B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025666 [exp] 515 / 0 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10042713 [exp] 321 / 5e-109 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 318 / 6e-108 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10008898 [exp] 202 / 4e-63 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10020673 [exp] 192 / 6e-59 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10023207 [exp] 191 / 2e-58 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10015208 [exp] 187 / 3e-57 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031484 [exp] 187 / 2e-56 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10020674 [exp] 174 / 6e-52 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 285 / 6e-95 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 275 / 2e-91 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 237 / 2e-76 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 232 / 2e-74 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.005G022000 [exp] 212 / 6e-67 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 198 / 2e-61 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.018G016100 [exp] 188 / 1e-57 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 171 / 4e-51 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.012G136200 [exp] 103 / 3e-25 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1) Potri.015G138600 [exp] 97 / 6e-23 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018171 pacid=23145181 polypeptide=Lus10018171 locus=Lus10018171.g ID=Lus10018171.BGIv1.0 annot-version=v1.0 ATGCAAACGTGTAAACGCCTTCACGCCTTCACTCATCAGTCGCATCATCATCCTCCGCCGCCGCCGCCGACGACGATGGACATGAACGACCTCCCTGAAG ACCTCATCGCCACCATCCTCTCCTTCACCGGACCTCGGGAGTCGTGCCGCCTGGCGGTGATCTCCGCCACTTTCTGGTCGGCTTCGCTGTCAGATACTGT CTGGGACCGGTTCCTCCCCGCCGACTACCTCTCCATTCTCTCCGGCGACGACGAAAACAAAAACGAAAGCAAAAATACTCCTTCCTATGGCTCCAAGAAG GATCATTTCCTACGACTCTGCCACAACCCAACTCTAATCGATGGCGGTACAAAGAGTTTCTCGCTGGATAAACGGAGTGGGAAGAAATGCTACATGATCT CCTGCAGGGATCTCTACATTACATGGGGGGATACTCCTCGGTACTGGAAATGGATTCCTGATTCTGATTCCAGGTTTGGGGAAGCAGCTGAGCTAGTTGG AGTATGCTGGTTGGAGATCAAGGGCAGAATCAGAACATCACTGCTGTCCCCTACAACATTATACACAGCTTACTTGGTCTTTAAGCCAACCCAAGGATCG TACGGGTTCGACTACCAGCCCGTGGAGGTCTCGGTGGGGATCTCCGGGAGCGAGGAGTCTAAGAGCGTCCGGACTGCGTTCCTGGACGGAGGAGGGGCCG AGCAGATGAGGAGGAGAGTCCAGGTAGTGACTGCTCCTAGACGGTTGGGGTCCCTCCGATTCAGCCGTGGTAGGGTACTAGGGTTCCTCCCGCACGCTCC GGTGCAGGGAATGACCACCGAGGACGGTACCGGTGGTGATGGAGCTCGAGTCAGAGGGATCTACCCAAAGGAAAGAGGGGATGAGTGGTTTGAAGTTGAG CTGGGTGACTTCTTGAGCAAGGAAGGTGAAGTTAGTGGGGAAGTGCTGGAAATGTGTGTTGCTGAGGTGAAAGGTGGGAATTGGAAAGGTGGCCTTGTTG TTCAAGGCATCGAGATCAGACCAAAACAAGGGTAA
AA sequence Show only first row Show all	>Lus10018171 pacid=23145181 polypeptide=Lus10018171 locus=Lus10018171.g ID=Lus10018171.BGIv1.0 annot-version=v1.0 MQTCKRLHAFTHQSHHHPPPPPPTTMDMNDLPEDLIATILSFTGPRESCRLAVISATFWSASLSDTVWDRFLPADYLSILSGDDENKNESKNTPSYGSKK DHFLRLCHNPTLIDGGTKSFSLDKRSGKKCYMISCRDLYITWGDTPRYWKWIPDSDSRFGEAAELVGVCWLEIKGRIRTSLLSPTTLYTAYLVFKPTQGS YGFDYQPVEVSVGISGSEESKSVRTAFLDGGGAEQMRRRVQVVTAPRRLGSLRFSRGRVLGFLPHAPVQGMTTEDGTGGDGARVRGIYPKERGDEWFEVE LGDFLSKEGEVSGEVLEMCVAEVKGGNWKGGLVVQGIEIRPKQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10018171 [exp]	0	1
AT4G29110			unknown protein		Lus10014153 [exp]	1.7	0.9003
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	2.8	0.8831
AT5G42680			Protein of unknown function, D...		Lus10021759 [exp]	4.0	0.8660
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	6.7	0.8750
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	8.1	0.8658
AT5G05260		CYP79A2	cytochrome p450 79a2 (.1)		Lus10000627 [exp]	9.4	0.8550
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	14.0	0.8376
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	14.0	0.8565
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	14.1	0.8648
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	15.0	0.8404

Compare expression of checked genes

Lus10018171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.