Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80480 578 / 0 PTAC17 plastid transcriptionally active 17 (.1) AT1G15730 550 / 0 Cobalamin biosynthesis CobW-like protein (.1) AT1G26520 248 / 3e-78 Cobalamin biosynthesis CobW-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025665 [exp] 742 / 0 AT1G80480 606 / 0.0 plastid transcriptionally active 17 (.1) Lus10004653 [exp] 241 / 2e-75 AT1G26520 540 / 0.0 Cobalamin biosynthesis CobW-like protein (.1) Lus10026658 [exp] 240 / 3e-75 AT1G26520 539 / 0.0 Cobalamin biosynthesis CobW-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030100 [exp] 591 / 0 AT1G80480 607 / 0.0 plastid transcriptionally active 17 (.1) Potri.001G201400 [exp] 425 / 6e-146 AT1G80480 442 / 6e-153 plastid transcriptionally active 17 (.1) Potri.001G133500 [exp] 419 / 2e-144 AT1G80480 416 / 2e-143 plastid transcriptionally active 17 (.1) Potri.008G094100 [exp] 219 / 5e-67 AT1G26520 496 / 9e-177 Cobalamin biosynthesis CobW-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07683 [flax] [poplar] CobW_C Cobalamin synthesis protein cobW C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF02492 [flax] [poplar] cobW CobW/HypB/UreG, nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018172 pacid=23145270 polypeptide=Lus10018172 locus=Lus10018172.g ID=Lus10018172.BGIv1.0 annot-version=v1.0 ATGGCGCCGATGTCACTGGAGCTCGCTACAACGTTCCTCACCTTCGCTTCTCGCAACCAAACTCCTCTTCTCAGAACCCGCACCAGTCTCATCCTTCCTC TCTTCTCCACACTCCCCAAGGCGGCTTCATCTTCCACTACAACTACTACCCGCTCCTTCCAATCCTCCGCCGTTCCCTTCCGTTTCTCCGTCAGACCTAC TTCCGCCGCCCGCAGAAGATTCTCCGCCAAGTCCTCCTCCTCCGCTGCAACCACCGCGTACAGCGAGGACTCTGATGTCACCACGAAAATCCCCCGCGAT GATCGGATTCCCGCGACTATCATCACCGGGTTCCTCGGCTCCGGAAAGACGACTTTGCTCAACCATATTTTGACTGGAGAGCACGGGAAGCGCATAGCTG TAATCGAGAACGAGTATGGTGAGGTTGATATCGATGGTTCGTTAGTTGCTGCCAAGACGACTGGAGCGGAGGACATTGTCATGTTGAACAATGGTTGCTT GTGTTGTACTGTGAGGGGCGACCTTGTTAGAATGATTGCAGAGCTGGTTAATAAGAAGAAAGGAAAGTTCGATCATATTGTGATAGAGACGACTGGATTG GCAAATCCAGCACCGATCATTCAGACCTTTTATGCAGAGGATCAAGTTTTTAATGATGTGAAATTGGATGGTGTTGTCACTTTGGTTGATGCTAAGCATG CTGCCTTACATCTGGATGAGGTCAAGCCAAAGGGGATAGTCAATGAAGCAGTTGAGCAAATTGCATATGCCGACAGGATCATCGTAAACAAAACTGATCT TGTTGGAGAGCAGGAACTTGGTCCCCTAGTGCAGAAAATAAGGAGTATTAATAGCATGGCTGAGATGAAGAGGACCCAATTCGGACAAGTTGACTTGGAT TACGTATTAGGCATTGGGGGCTTTGATCTGGAGAGGATTGAGACTGCAGTGGATGTTGACGGAAAGAAAGATGATACCGTTCATGACCATGAACACCATC ACCATCACGAGGAACATGACCACCACCATCACCATGAACATGACCACAAGCATGAACACAATGATGGGCATCACCATGCACACGATCACACTCACGATCC TGGTGTTTCTTCAATGGCCATTGTTTGCGAGGGGGTGTTGGACCTAGAGAAGGCTAACATGTGGCTAGGCACATTGCTGATGGAACAAAGTGAGGACATA TACAGGATGAAAGGGCTTCTGTCTGTTCAGGGCATGGATGAGAGATTTGTGTTCCAGGGAGTTCATGACATCTTCCAAGGCTCGCCGGATAGACCATGGG GGCCGGAAGAAGCAAGGATCAATAAGATTGTGTTCATAGGGAAGAACTTGAACAAGGAGGAGATCGAGAAGGGATTCCGTGCCTGTTTACTGTGA
AA sequence Show only first row Show all	>Lus10018172 pacid=23145270 polypeptide=Lus10018172 locus=Lus10018172.g ID=Lus10018172.BGIv1.0 annot-version=v1.0 MAPMSLELATTFLTFASRNQTPLLRTRTSLILPLFSTLPKAASSSTTTTTRSFQSSAVPFRFSVRPTSAARRRFSAKSSSSAATTAYSEDSDVTTKIPRD DRIPATIITGFLGSGKTTLLNHILTGEHGKRIAVIENEYGEVDIDGSLVAAKTTGAEDIVMLNNGCLCCTVRGDLVRMIAELVNKKKGKFDHIVIETTGL ANPAPIIQTFYAEDQVFNDVKLDGVVTLVDAKHAALHLDEVKPKGIVNEAVEQIAYADRIIVNKTDLVGEQELGPLVQKIRSINSMAEMKRTQFGQVDLD YVLGIGGFDLERIETAVDVDGKKDDTVHDHEHHHHHEEHDHHHHHEHDHKHEHNDGHHHAHDHTHDPGVSSMAIVCEGVLDLEKANMWLGTLLMEQSEDI YRMKGLLSVQGMDERFVFQGVHDIFQGSPDRPWGPEEARINKIVFIGKNLNKEEIEKGFRACLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	0	1
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	3.2	0.8620
AT2G03880		REME1	required for efficiency of mit...		Lus10001617 [exp]	5.3	0.8867
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10016155 [exp]	8.1	0.8482
AT2G20390			unknown protein		Lus10024957 [exp]	11.6	0.7858
AT3G51010			unknown protein		Lus10042347 [exp]	11.7	0.8817
AT4G19950			unknown protein		Lus10018322 [exp]	13.8	0.8398
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	13.9	0.8347
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	14.0	0.8672
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	15.7	0.8772
AT2G15000			unknown protein		Lus10020971 [exp]	15.9	0.8438

Compare expression of checked genes

Lus10018172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.