Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56240 47 / 1e-06 ATPP2-B13 phloem protein 2-B13 (.1) AT1G09155 42 / 0.0001 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02250 42 / 0.0001 ATPP2-B2 phloem protein 2-B2 (.1) AT1G56250 42 / 0.0001 ATPP2-B14 phloem protein 2-B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025661 [exp] 260 / 5e-88 AT2G02340 109 / 7e-28 phloem protein 2-B8 (.1) Lus10025666 [exp] 53 / 2e-08 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10018171 [exp] 52 / 5e-08 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10042713 [exp] 49 / 8e-07 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 47 / 3e-06 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10015208 [exp] 46 / 5e-06 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10023207 [exp] 45 / 7e-06 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10008898 [exp] 45 / 9e-06 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10025660 [exp] 41 / 0.0002 AT2G02360 183 / 9e-57 phloem protein 2-B10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 57 / 8e-10 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 55 / 4e-09 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 54 / 8e-09 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G016000 [exp] 48 / 6e-07 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 44 / 1e-05 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.013G012600 [exp] 44 / 2e-05 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.005G022000 [exp] 44 / 2e-05 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018173 pacid=23145220 polypeptide=Lus10018173 locus=Lus10018173.g ID=Lus10018173.BGIv1.0 annot-version=v1.0 ATGTCGGGTGGCTGGTACCTTAAGTACGACGGGGATTGTTTGTTCGGGGCCTGGGTACAGAGGCTAAAACTCGGTTCGTCGTTCAAAATTCACGGCCAGA TCCATACCGGAATGCTGTCGCCGAGCACATTATACACGGCATACTTGGTGTTCAGGTTGAAGGAGGGGAAGACCGGTTCGAATCCTCAACCCATTCAACT CAAGGCGCGACTCGTTTATCGTCGAGGTGGTGGTTCGGGAAAAGAAGCACGCGATGAGCGAAAACTGAAGCTGGGTCGCAATTGGTGTCGGAGGTGGGAG CACTCGGGCGTGCGTCTGGCCCTGGACAAGGACATGTACCGAAACCCGGCTAAGACGAAGGAGATGGAGTGGTGGAAGGAGATGAGAGGAAACTGCTGGC TCGAGGCGAAACTCGGAGAGTTTCTTAGTCGTGCGAGAGAGGAAGAAGAGGAGGAGGAGGACGAATTAGTCGATATTTTCGTAATCAGTTCTGTGGTACA CATGGATGTTAGAGTTTATGGCATAGAACTTAGACCTAGTTATTAA
AA sequence Show only first row Show all	>Lus10018173 pacid=23145220 polypeptide=Lus10018173 locus=Lus10018173.g ID=Lus10018173.BGIv1.0 annot-version=v1.0 MSGGWYLKYDGDCLFGAWVQRLKLGSSFKIHGQIHTGMLSPSTLYTAYLVFRLKEGKTGSNPQPIQLKARLVYRRGGGSGKEARDERKLKLGRNWCRRWE HSGVRLALDKDMYRNPAKTKEMEWWKEMRGNCWLEAKLGEFLSRAREEEEEEEDELVDIFVISSVVHMDVRVYGIELRPSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10018173 [exp]	0	1
					Lus10017763 [exp]	8.7	0.5974
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10026016 [exp]	24.1	0.5559
AT1G55790			Domain of unknown function (DU...		Lus10032899 [exp]	35.4	0.5357
AT5G40250			RING/U-box superfamily protein...		Lus10008797 [exp]	41.4	0.5256
AT2G25010			Aminotransferase-like, plant m...		Lus10003764 [exp]	42.6	0.5256
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	48.2	0.5242
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10006125 [exp]	48.3	0.5512
					Lus10034814 [exp]	57.9	0.4850
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10042872 [exp]	61.4	0.4803
					Lus10012676 [exp]	64.4	0.4967

Compare expression of checked genes

Lus10018173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.