Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64420 338 / 1e-99 DNA polymerase V family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037435 [exp] 996 / 0 AT5G64420 831 / 0.0 DNA polymerase V family (.1) Lus10025659 [exp] 530 / 4e-171 AT5G64420 1206 / 0.0 DNA polymerase V family (.1) Lus10041274 [exp] 511 / 4e-163 AT5G64420 1208 / 0.0 DNA polymerase V family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079900 [exp] 424 / 1e-130 AT5G64420 958 / 0.0 DNA polymerase V family (.1) Potri.001G285600 [exp] 416 / 7e-128 AT5G64420 952 / 0.0 DNA polymerase V family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04931 [flax] [poplar] DNA_pol_phi DNA polymerase phi
Representative CDS sequence Show only first row Show all	>Lus10018176 pacid=23145217 polypeptide=Lus10018176 locus=Lus10018176.g ID=Lus10018176.BGIv1.0 annot-version=v1.0 ATGGGGAGCAATAAGAGAAATTGTAAATCAGTAGAGGAAGTTGAAGGTGAAAAGCAACTCGCCAATCCCATCAAGAAGAAGCTGAAGAAGGACAATAAGT CAAAGGGTATTGGTAATGTGGATGCTACTGCTGTTTCTGTAAACGATTCAGTCAAACCCATGGAAAGAAAGAAACTAAGGAAAAATTTGGACAAGGTGCG TCACCGCGGCCCGGAGAAGAGTGAACACGAGAAACCGAAACCAATGGATGTGGATTCCAAAGTTGGCGAAACCAAGAGGGGACAAATGGTAGCTTCATCT AGTAAAGGAGTGCCTGCTTTCCACATTGACGTTTTCAAGGAGTTGGCATCCGCTGATGCTTCTGTAAGAGCAGCTGGTGTTCAAAGACTAGTAACCGAGT TGCAGAAGGTTCAGAATGCTTATCAAAGCAATAAGGAGTTGTATGAAAGTGGGTTGGAATTGGAGGCTGATAAAGATGATGGCTTGAATGATACTGCACC TTCTGTCAGATATGCAATTAGGAGACTTGTCCGTGGTGCTTCATCATCTACGGAGGAAGCAAAGGATTGTCTTTTAGGTAGATTATTTTCATACGGCGGT CTTGCTCGATCGGGGAGGTTGAATGAATTGTGTATTTCAGATCCAAACACTCCAGTTATCAAGGAGTTTGTCAGTGTACTTCTTACTCTTTCCGCAAAGA AATCTTATTTGCCGGAGCCTGTTGTTACAGTTATCTTGGACTTGGCCGAGGAGTTGCAAGTGGAGCAGATATTGAACCATGTACTCGAAGCTCCTGGACT TTCTGAGTGGTTTAGTGATGCTGTGGATGCTGGAAACCCGGATGCTTTACTTCTAGCTTTGAGACTTTGGGAGAAAGCTTCAGTTGATAGCTTAAAGTTT GGAAGAGTTCTGCCGTATCCATTCAGCCCTGGCAGCTTCTTTTCCTCTGAGCATTTGAACCTACTTAATAACTGTTGGAAGCATTTGGCGCTGGATGTTT TGCTCCTCCTCCTTCCAAGACTGCCTGCATCCTTGGCACATGTGGTTCTCTCTGACAAACTTGTGCAAGACCTGATGGATATTCTTTCAACAAAAGATAG CTGGCTCTATAAAGTTGCACAACATTTTATCAAAGAATTATCAGACTGGGTTGGTAATGATGATGTCAGAAGGGTTGCTGTTATTGTTGCCTTACAGAAA CACAGCAATGGGAAATTTGATTCCATAACAAAGGCAAAAACAGTAAAAGCTTTGTTGGGCGAGTTCAAGACAGAATCTGGTTGCCTGTTATTCATCCAAA ATTTGGTTAACTTGTTTGTTGATAAGAGCAATGCTTCGGATGAACCTTCAGACCAAAGCCAGACAACTGATGACAATTCAGAGATGGGAAGGCTAGATGA TAAAGATTCTGGTGCAGTGGGAAATTCTGACTCCTTGAAGAGTTGGATTGTGGAATCATTGCCAAGTATTTTGAAAATTTTTAAGTTGGATCCTGAAGAA AAATTACGTGTCCAAAAGGAAATCTTGAAGTTCCTAACCGTTCAAGGTTTGTTCTCTGCATCTCTTGGCTCTGAAGTCACGTCATTTGAACTTCAAGAGA CATTTACGTGGCCAAAGGCAGCAACTTCAAGTGCTATCTGCAGAATCTGCATTGAGCAAATCCAATCATTGCTGGCAAGTGCTCAAAAGATGGAGTCGTC TCCTGCTTTGCTGAATGGCTCCGAGGATAGTGATCTTGGGTCTTTCTTCATGCAATTCCTTTCAACATTGCGTAGCATACCATCTGTTTCTCTATTCCGA ATTTTGAATGATGAGGATGAGAAGGCATACCAAAAGTTACTAGTAACGGAAGCTAGTCTTCACAAACAGGCATTCGTTAATGCACAGACTAGAGAAGTCA GCGAGCAGTTAGGACAGAGAATTTGGGGAATTCTGAACAAGAAAATATTGAAAGAAAAGGAATTTCCAAAAGGAGCTGATGTGAATCCCTCAATGCTAGT ATCGTTGCTGGAAAGAAATTTGAAGTTAGCATCAAGGCCATTTAAAAAGAAGAAATCTGCATCTGCTGCTGACCAATCGAGCAAGAAAAAACAGGAAGCC TCCCAGAAACAACACAAGATGATTGCTTCTCTTTCTCAAGATTCGACATTTTGGATTCTCAAGATAATCGATGCCAGCAAGTTCAGCAGGGAAGAACTCG AGAGCGTGTTTCGTTCCTTGAAGAACATGCTCACAGGGTTCTTCGATAGTAAAAAATGTCCGATAAAGTCTGGTTTTGTGAAAGAACTATTCAAGAGGAG ACTGTGGATTGCACACCACCTGTTTGAGTTCCTTGTAGATAAATGCCGTAGCTCAAAGCTAGAGTTTCGTCGAGTCGAAGCACTTGATCTGGTTCTGGAG GTGTTGAAATCAATGGCTGGAAAGAAGAAGACATTGAAGATTGCGAAGCTGAGTGAGCTAGTGAAGGAGCTGGTGACGAATATGCCAGAGAAACAGTCGA GGCATGCCGATATTCGCAGGTTTTGTGGGAAAGTGTTTCAGATTATATCAGCCAACGACATGGCCAAGTCTTTTTTGAAAGAGTTGGATTCAGCTGCTCA AAGCTCTTGTGAATTGCGCCTGGGTGAGCTTTTCCTCAACTGCAAGAATGGAGTTGCAAAATTTTGA
AA sequence Show only first row Show all	>Lus10018176 pacid=23145217 polypeptide=Lus10018176 locus=Lus10018176.g ID=Lus10018176.BGIv1.0 annot-version=v1.0 MGSNKRNCKSVEEVEGEKQLANPIKKKLKKDNKSKGIGNVDATAVSVNDSVKPMERKKLRKNLDKVRHRGPEKSEHEKPKPMDVDSKVGETKRGQMVASS SKGVPAFHIDVFKELASADASVRAAGVQRLVTELQKVQNAYQSNKELYESGLELEADKDDGLNDTAPSVRYAIRRLVRGASSSTEEAKDCLLGRLFSYGG LARSGRLNELCISDPNTPVIKEFVSVLLTLSAKKSYLPEPVVTVILDLAEELQVEQILNHVLEAPGLSEWFSDAVDAGNPDALLLALRLWEKASVDSLKF GRVLPYPFSPGSFFSSEHLNLLNNCWKHLALDVLLLLLPRLPASLAHVVLSDKLVQDLMDILSTKDSWLYKVAQHFIKELSDWVGNDDVRRVAVIVALQK HSNGKFDSITKAKTVKALLGEFKTESGCLLFIQNLVNLFVDKSNASDEPSDQSQTTDDNSEMGRLDDKDSGAVGNSDSLKSWIVESLPSILKIFKLDPEE KLRVQKEILKFLTVQGLFSASLGSEVTSFELQETFTWPKAATSSAICRICIEQIQSLLASAQKMESSPALLNGSEDSDLGSFFMQFLSTLRSIPSVSLFR ILNDEDEKAYQKLLVTEASLHKQAFVNAQTREVSEQLGQRIWGILNKKILKEKEFPKGADVNPSMLVSLLERNLKLASRPFKKKKSASAADQSSKKKQEA SQKQHKMIASLSQDSTFWILKIIDASKFSREELESVFRSLKNMLTGFFDSKKCPIKSGFVKELFKRRLWIAHHLFEFLVDKCRSSKLEFRRVEALDLVLE VLKSMAGKKKTLKIAKLSELVKELVTNMPEKQSRHADIRRFCGKVFQIISANDMAKSFLKELDSAAQSSCELRLGELFLNCKNGVAKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64420			DNA polymerase V family (.1)		Lus10018176 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016468 [exp]	2.2	0.8634
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10027997 [exp]	25.8	0.8168
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	63.7	0.8100
AT5G49880			mitotic checkpoint family prot...		Lus10007438 [exp]	97.2	0.8004
					Lus10022119 [exp]	237.5	0.7748

Compare expression of checked genes

Lus10018176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.