Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21830 100 / 2e-25 unknown protein AT1G44608 54 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025658 [exp] 338 / 5e-118 AT1G21830 63 / 7e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083900 [exp] 133 / 3e-38 AT1G21830 145 / 1e-43 unknown protein Potri.005G177600 [exp] 125 / 2e-35 AT1G21830 132 / 8e-39 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05340 [flax] [poplar] DUF740 Protein of unknown function (DUF740)
Representative CDS sequence Show only first row Show all	>Lus10018177 pacid=23145245 polypeptide=Lus10018177 locus=Lus10018177.g ID=Lus10018177.BGIv1.0 annot-version=v1.0 ATGAACAACTACAAGGAAGAAACCAGTGATTCATACTGCTACTTCCACCCAAAGGAACCAGTGATCGGAGTCTGCCCACTCTGTTTACATGAACGCCTCT TGATCTTGCTAGCTGCAACTAACAAGCAACGCCGCCGTCAGTATCTTTCATCTTCTTCTTCTTCTAATTCTTCCTCTGCTGCTGCTGCAACTTGTTCTTC TTCATCTCCACGGCGCCATAAGAAGAAGCCGTCGATTCTGTTTTCTCTGGGTTCTCTGCTCATCAACCGCCTCGAGTTCAGAAACCACCACCCCAAATCT TATGACGACGACGATGATCATGATGATGATAAAATCAACCCAGATTGTGGTTTTGATTATGGTGATAATTATGATGATGCCTCCACCAGCCTAGAAGACT CGTTCATTTCAATCCAATTTCAAGACAATGGAAAGGTCTCGTGGGAAAAAGGTATAGGATTGGTCGATTCCGACAACAAAAGTATTAAGAAGAAGATTGA TCAAAACAAGAAGAAGTTGAATAGTAACATCCATTGTTACAAAGATGAAAGGAGTGTGGTAGGGCACTCGAAGCCACGCGGTGGCGGATCGCTGAGGTGG CGGAAGAGGATAGGCCACATGTTCCACCTCGTCAGGTGGAAGAGGTCCAGCAAGGCGAATACTTGCCACGTGGGATCCAAGGTGGAAGGGCTCATCAAGG TGAGGAGTAATAAAGGGTGGAATTTAAGGACTTTGAGCAAGAGGAGAAGTACTAGAGAATAA
AA sequence Show only first row Show all	>Lus10018177 pacid=23145245 polypeptide=Lus10018177 locus=Lus10018177.g ID=Lus10018177.BGIv1.0 annot-version=v1.0 MNNYKEETSDSYCYFHPKEPVIGVCPLCLHERLLILLAATNKQRRRQYLSSSSSSNSSSAAAATCSSSSPRRHKKKPSILFSLGSLLINRLEFRNHHPKS YDDDDDHDDDKINPDCGFDYGDNYDDASTSLEDSFISIQFQDNGKVSWEKGIGLVDSDNKSIKKKIDQNKKKLNSNIHCYKDERSVVGHSKPRGGGSLRW RKRIGHMFHLVRWKRSSKANTCHVGSKVEGLIKVRSNKGWNLRTLSKRRSTRE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21830			unknown protein		Lus10018177 [exp]	0	1
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	2.4	0.9268
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10011502 [exp]	2.8	0.9115
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	3.0	0.9277
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	5.8	0.9273
AT5G24580			Heavy metal transport/detoxifi...		Lus10032923 [exp]	7.1	0.8724
AT5G53750			CBS domain-containing protein ...		Lus10042702 [exp]	8.9	0.8958
AT3G24630			unknown protein		Lus10043221 [exp]	9.0	0.8699
AT1G47410			unknown protein		Lus10006481 [exp]	9.4	0.8957
AT1G47410			unknown protein		Lus10009767 [exp]	12.2	0.9041
AT5G58000			Reticulon family protein (.1)		Lus10035829 [exp]	12.5	0.8855

Compare expression of checked genes

Lus10018177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.