Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77590 1053 / 0 LACS9 long chain acyl-CoA synthetase 9 (.1) AT2G04350 915 / 0 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 372 / 3e-119 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 353 / 1e-111 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 317 / 3e-98 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 315 / 1e-97 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 309 / 2e-95 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G49430 308 / 5e-95 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT1G64400 303 / 3e-93 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT3G23790 179 / 2e-47 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025657 [exp] 1361 / 0 AT1G77590 1067 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10029669 [exp] 1201 / 0 AT1G77590 1091 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10042707 [exp] 1192 / 0 AT1G77590 1082 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10016083 [exp] 907 / 0 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10012307 [exp] 898 / 0 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10016085 [exp] 474 / 1e-161 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10010530 [exp] 361 / 1e-114 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 357 / 4e-113 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10029918 [exp] 354 / 3e-112 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084100 [exp] 1121 / 0 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 1118 / 0 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 905 / 0 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169600 [exp] 762 / 0 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.013G021300 [exp] 364 / 3e-116 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 350 / 1e-110 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.001G091900 [exp] 325 / 2e-101 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 317 / 1e-98 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 311 / 4e-96 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 299 / 7e-92 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10018178 pacid=23145171 polypeptide=Lus10018178 locus=Lus10018178.g ID=Lus10018178.BGIv1.0 annot-version=v1.0 ATGACCCCGTACCTGATCATCGGAGCTATAGTCCCGCTGGTGGCGGCGACCCTTCTCCTGTTTAAGCAGAGCTCCAAGAAGAAACGCGGAGTTCCGATCG GGGTCGGAGGCCAATCGGGTTACGCGATTCGGAACGCTGGTTTCCCCACGCCGCTCGAGACGGCGTGGGAGGGCGTGTCCACTCTGGCGGAGCTATTCGA GTACGCTTGCAAGAGGCACGGTGGGAAGAACCTGCTCGGGACGCGGAAGCTGGTCGCCAGGGAGGTTGAAGTTAGCGGAGATGGAAGGTCGTTCGAGAAG CTTCATTTGGGGGAATACCAGTGGCTAACTTACGCTGCTGTGTTCCAGAGAGTTTTGAATTTTGGGTCTGGGTTGGCGAAATTGGGGCATCAGAAGGACG AGCGTGTGGCCATCTTTGCTGATACTAGAGCTGAATGGTTCATTTCGTTGCAGGGTTGCTTACGGCGTAATGTGACAGTGGTCACCATCTATGCTTCTTT GGGAGAGGAAGCTTTGTCCCACTCATTGAATGAGACTGAAGCAACGACTGTGATTTGCGGGAGCAAGGAACTGAAGAAACTCGTAGACATAAGCGGGCAA CTTAAGACAGTGAAGCGGTTAATATGTATGGATGATGATCTTCCTTCTGTTTCGTCTCCGTTGGAGTGGACGATCAAGTCCCTTGCCAGTGTGGAGAAAC TCGGTCAAGAAAATCCCACCGGAGCTGAATTACCCCTGCCAGCTGATGTTGCTGTCATTATGTATACAAGTGGGAGTACCGGGTTACCAAAGGGAGTAAT GATGACACATGCTAATGTCCTTGCTGTAGTTTCTGCAGTCAGGACCATTGTTCCTGGCCTCGAAAGCAATGATGTCTATCTCGCATATCTTCCGTTAGCT CATATTCTCGAAATAGCAGGCGAAAATATAATTGCTGGAGTTGGAAGTGCTATAGGATATGGCACTCCTCTGACACTCACTGACACTTCGAACAAGATAA AGAAAGGAACCAAGGGAGATGCTACTGAGTTGAGGCCAACTGTGATGGCAGCTGTTCCAGCAATTCTTGACCGCGTTCGAGATGGAGTGCGTAAGAAGGT AGATGCAAAAGGTGGATTGTCCAAGTGTCTATTTGACTTGGCATACAATCGCCGTTTGTCAGCAGTTAATGGTAGTTGGTTCGGAGCTTGGGGACTAGAA CTGCTTCTGTGGAACATTCTTGTTTTTAAGAAGGTTCGAGCAGTTTTAGGAGGTAGAGTGCGCTTTCTGCTTTCTGGTGGCGCTCCTCTTTCTGGTGATA CTCAAAGATTTATCAACATTTGCCTTGGGGCTCCAATCGGCCAAGGTTATGGTCTTACTGAGACTTGCGCTGGTGGGACTTTTTCTGAGTTTGATGATAC ATCTGTTGGCCGAGTTGGCAATCCGCTCCCTTGCTCGTATATTAAGTTAGTAGATTGGCCAGAAGGTGGGTATTTGATCAGCGATTCGCCCATGCCTCGT GGGGAAATCGTCATTGGTGGCCCCAACGTCACTCTTGGATACTTTAAAAATGAAGAGAAATCAAGAGAAGTCTACAAGGTTGACGAGAAAGGAATGAGAT GGTTCTACACCGGTGATATAGGCCAGTTTCATTCTGACGGATGCCTAGAGATAATCGACCGTAAAAAGGACATTGTCAAGCTTCAGCATGGGGAATACGT CTCGTTGGGGAAGGTCGAGGCTGCCCTTAGCGGTTGCCCGTACGTGGACAACCTAATGCTCCATGCCGATCCATTCCACAGTTACTGTGTGGCCGTAGTG GTCCCTTTGCAGCCCGCCTTGGAACAATGGGCAGCAAAGCAAGGAATCAGCTACGCAGATTTCTCCGATCTTTGTAACAAGAATGAAAGCGTAAAGGAAG TCCAAGCTTCTCTTGCAAAGGAAGCGAAGAAGGCACGGTTGGAGAAGTTTGAGATCCCGGCAAAGATCAAGCTGCTTTCGAATCCGTGGACACCCGAGTC TGGCTTGGTGACTGCAGCTCTGAAGATCAAGAGGGAAGCCATTAGGAAAGCCTTCTCTGAAGATCTATCTAAGATGTATGAATCTTAA
AA sequence Show only first row Show all	>Lus10018178 pacid=23145171 polypeptide=Lus10018178 locus=Lus10018178.g ID=Lus10018178.BGIv1.0 annot-version=v1.0 MTPYLIIGAIVPLVAATLLLFKQSSKKKRGVPIGVGGQSGYAIRNAGFPTPLETAWEGVSTLAELFEYACKRHGGKNLLGTRKLVAREVEVSGDGRSFEK LHLGEYQWLTYAAVFQRVLNFGSGLAKLGHQKDERVAIFADTRAEWFISLQGCLRRNVTVVTIYASLGEEALSHSLNETEATTVICGSKELKKLVDISGQ LKTVKRLICMDDDLPSVSSPLEWTIKSLASVEKLGQENPTGAELPLPADVAVIMYTSGSTGLPKGVMMTHANVLAVVSAVRTIVPGLESNDVYLAYLPLA HILEIAGENIIAGVGSAIGYGTPLTLTDTSNKIKKGTKGDATELRPTVMAAVPAILDRVRDGVRKKVDAKGGLSKCLFDLAYNRRLSAVNGSWFGAWGLE LLLWNILVFKKVRAVLGGRVRFLLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGGTFSEFDDTSVGRVGNPLPCSYIKLVDWPEGGYLISDSPMPR GEIVIGGPNVTLGYFKNEEKSREVYKVDEKGMRWFYTGDIGQFHSDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSGCPYVDNLMLHADPFHSYCVAVV VPLQPALEQWAAKQGISYADFSDLCNKNESVKEVQASLAKEAKKARLEKFEIPAKIKLLSNPWTPESGLVTAALKIKREAIRKAFSEDLSKMYES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	0	1
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	1.4	0.9015
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	2.4	0.8913
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	4.5	0.8636
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	5.3	0.8423
AT3G22750			Protein kinase superfamily pro...		Lus10022076 [exp]	5.7	0.8680
AT5G49610			F-box family protein (.1)		Lus10017086 [exp]	9.0	0.8390
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	9.2	0.8720
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	9.4	0.8333
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	9.8	0.8169
AT3G46450			SEC14 cytosolic factor family ...		Lus10004953 [exp]	10.2	0.8073

Compare expression of checked genes

Lus10018178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.