Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08320 389 / 9e-134 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 99 / 2e-22 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT4G12400 85 / 1e-17 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT5G09420 82 / 1e-16 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G17970 79 / 1e-15 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT1G12270 76 / 1e-14 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G62740 74 / 5e-14 Hop2 Hop2, stress-inducible protein, putative (.1) AT5G12430 72 / 2e-13 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G42580 72 / 2e-13 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G56440 70 / 6e-13 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025656 [exp] 770 / 0 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028919 [exp] 93 / 4e-20 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 92 / 1e-19 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 84 / 2e-17 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10009682 [exp] 82 / 9e-17 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10042001 [exp] 82 / 1e-16 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 82 / 2e-16 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10024597 [exp] 82 / 2e-16 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10028154 [exp] 70 / 1e-12 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177400 [exp] 439 / 4e-153 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G141800 [exp] 92 / 5e-20 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.003G113400 [exp] 89 / 5e-19 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.012G046900 [exp] 87 / 3e-18 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G119500 [exp] 84 / 2e-17 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G205300 [exp] 82 / 1e-16 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.015G038600 [exp] 82 / 1e-16 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.013G008400 [exp] 77 / 3e-15 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014100 [exp] 75 / 2e-14 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G166300 [exp] 70 / 1e-12 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10018179 pacid=23145265 polypeptide=Lus10018179 locus=Lus10018179.g ID=Lus10018179.BGIv1.0 annot-version=v1.0 ATGACGAACTTGAAAACTGACTCTCCCCTCTCTCGCCGCATCGTTCGAGCTTTCCTCGACTTCCTCGACTCCGTTGAACCAGCTCCAGGAGTCGACGTCG AAGGGCTGGAAGTGTCTCGTGAATGTTTATCCGACGCGTTTAAGCTTAATCTCAATTCCGATGATGGTCCCGTTGAGCCTGGTCTTCTGGTCAACCTATT TCGCTCGATGGACTCGCATGGTGTCCATCGTGCTGGTGCTTCTCAATCTAAAGCTCAGCAGGATGAGGATTGGACTAGACAGCCTGATGGAACAGGGGTA TCAAATGATGAATTGTTTGGACAGTTCTTTGCTGCGCTTGAGAAACATCACTTCTTCAAGGCAACGCCTGACGGGAAGGATGATGTGATCCAACTAGACA AAGCGACATGGTTATTTCATGATGCTCTCAATGAGATGGAAAAGACTGGATGCCGATCGTTCGATGCTGATACCCTTGCCGAGACATTGAAGTCACAAGG TAACAGGGCGTTGCAGTCAAAGCGATACTATGATGCAATTGAGTTGTATTCTTGTGCCATTGCACTTAATGAAAAGAAAGCTGTTTATTACTGTAACAGG GCCGCTGCATACACTCAGGTCCAAACGTATGGTGAAGCAATCAGAGATTGTCTGAAGTCCATTGATATTGATCCCAATTACAGTAAGGCATACAGCCGTC TTGGATTAATATATTATGCACTAGGGAACTACAGAGATGCCATCGATAAAGGATTCAAGAAAGCCTTGCAATTGGATCCCAGAAACGAGTCGATCATCGA GAATATTCGGGTTTCAGAGAAAAAACTGAAGGAAGAACAACCATGGACTCAGAACGCCAGCGCAAGTTCAACCGGCATTCCTCCGTTCGGTGGTTCAATG CCGTTCGACCCGTCTTCGATCCCCATGAATTTCGCCAACATGATGCGAAACGTGGTGCAACCTGAACAAAGGCCGGGAGAAGCAAGCCGAGGAAATCCTG CCGATGAGCATCAGCCAGGAGTAGGAGCTGGAAACGTCAACGTCAATATAGAAGAAATGATGCCAGACGAACTTCGAGGGGTTCTCGGATCGGTGATGGG GATGTTCACCGGAGCTGCGCAGCCTCCTGCTTCCTCCGAGGGGAGTCAACCGTCGAATGGTAGACCACCAGCTAACTAG
AA sequence Show only first row Show all	>Lus10018179 pacid=23145265 polypeptide=Lus10018179 locus=Lus10018179.g ID=Lus10018179.BGIv1.0 annot-version=v1.0 MTNLKTDSPLSRRIVRAFLDFLDSVEPAPGVDVEGLEVSRECLSDAFKLNLNSDDGPVEPGLLVNLFRSMDSHGVHRAGASQSKAQQDEDWTRQPDGTGV SNDELFGQFFAALEKHHFFKATPDGKDDVIQLDKATWLFHDALNEMEKTGCRSFDADTLAETLKSQGNRALQSKRYYDAIELYSCAIALNEKKAVYYCNR AAAYTQVQTYGEAIRDCLKSIDIDPNYSKAYSRLGLIYYALGNYRDAIDKGFKKALQLDPRNESIIENIRVSEKKLKEEQPWTQNASASSTGIPPFGGSM PFDPSSIPMNFANMMRNVVQPEQRPGEASRGNPADEHQPGVGAGNVNVNIEEMMPDELRGVLGSVMGMFTGAAQPPASSEGSQPSNGRPPAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10018179 [exp]	0	1
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10024386 [exp]	5.7	0.8817
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027429 [exp]	16.6	0.8614
AT3G13620			Amino acid permease family pro...		Lus10039180 [exp]	18.4	0.8290
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	21.9	0.8609
AT1G54120			unknown protein		Lus10013152 [exp]	25.6	0.8390
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	29.3	0.8657
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	33.4	0.8630
AT2G34930			disease resistance family prot...		Lus10021973 [exp]	46.2	0.8448
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10014398 [exp]	52.1	0.8338
AT3G25160			ER lumen protein retaining rec...		Lus10022763 [exp]	59.9	0.8395

Compare expression of checked genes

Lus10018179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.