Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77600 848 / 0 ARM repeat superfamily protein (.1.2.3) AT5G47690 463 / 2e-139 binding (.1.2.3) AT4G31880 110 / 2e-24 unknown protein AT1G15940 105 / 1e-22 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 100 / 6e-21 Tudor/PWWP/MBT superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025655 [exp] 2282 / 0 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10039082 [exp] 471 / 2e-141 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10038777 [exp] 428 / 2e-126 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10017121 [exp] 102 / 1e-21 AT4G31880 473 / 2e-152 unknown protein Lus10018332 [exp] 100 / 8e-21 AT4G31880 464 / 2e-149 unknown protein Lus10002307 [exp] 75 / 2e-13 AT4G31880 214 / 4e-61 unknown protein Lus10026078 [exp] 74 / 3e-13 AT4G31880 228 / 1e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084300 [exp] 1159 / 0 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.006G004750 [exp] 462 / 3e-138 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.016G005400 [exp] 461 / 5e-138 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G263300 [exp] 112 / 7e-25 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 108 / 1e-23 AT4G31880 389 / 3e-120 unknown protein Potri.001G046500 [exp] 94 / 3e-19 AT4G31880 267 / 1e-76 unknown protein Potri.018G109600 [exp] 78 / 3e-14 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 76 / 1e-13 AT4G31880 167 / 8e-43 unknown protein Potri.003G181300 [exp] 72 / 2e-12 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018180 pacid=23145222 polypeptide=Lus10018180 locus=Lus10018180.g ID=Lus10018180.BGIv1.0 annot-version=v1.0 ATGGACACTACTCCTCTGAAACGTGTCTCCGAAGTAGGCGTCGAGCTCAGCCGTCTCACTCGCCCCGGCAAGGATTCCCTCATCAAATTACTCCGAGATG TGGCGGATGTCTTAGCTCAAATCGAGCACACTTCGTTCCTCGAGAATTCGGCTAAAGCTGAAGCTCCTAAGAAGCAAGCAGCTGCGTTGAAACCACTGAA GGAATCTATAGTTAAGCGCGGCCTTCAGCGCCATACTGACAGAGATGTCAAGCTCTTGGTGTCCGTCTGTGTCGCTGAGTTGTTCCGGATTCAAGCGCCG GAGACTCCGTTTGATGATAAGTATCTCGGAGATGTTTTCAAACTACTGCTCGGTACGTTCTCGGAGCTTGCTGACGTTGATAGCCCTTACTTTGGGAAGA GGGCCAGCGTTTTGGAGACTGTAGCTAAATGCGAATGCTATGTGATAATGCTGGATATCGGTTGTGGAGATTTGGTTGTCGAGATGTTCAATATCTTTTT CTCCGTTGCGAGGGGGCATCGTGGTAGTAGCGTGGAGAGGAATATATTGCATATAATGTCTCGCATCATAGACGAGGAGCCTTCTCAAAGACTTGTAGAT GTAATTCTACAGAATCTAATAAAGGAAGAAGAGGGTCCGTCACGGCTTGCTGTTTCAATTATCCACAAGTTTCATGATACACTTAAGCCTTCCGTTTGTC GCTTTTTGACTTCTTGCTTCTTGGAAAGAGATGGAGTTGAAAGTGAAGTAAAAGAGTCTTACCATGATATTTTATTTCAAGTTTACAAACACGAGCCTGA GATGCTTCTTAATGTCATCCCTTACCTGACTGAAGAACTACGGACTGACCAGGTTGATGTCCGATTAAAAGCTGTCACTTTGCTTGGGAAACTACTTGCT CTACGTGGGGACCATTTTGCTCAGCAACATCACAACGTTCTCATGGAGTTCAAGAACAGGTTTTCTGATAAATCTGTGGGAGTTAGACTCAGTGCTCTTC AATGTGCCAAAGCTAGTTACATTGCCAATCCACGGGGAAAATTATCAGAAGAGATTATTGGCAAGTCCTTTTCCGCATTTGAGGGACGATTGTTGGACTT CAGTGACGATCTCTCTGTTAGAAAGAAGGCCTTGGTGAAGTTGATGGAATTATATCGAGATTATTGTAGCAAATGTTCCCAACGGCTTATGGCTATTGAA GATCACTTTGAACAGATTCCTTCTAAAGTTTTGATGCTATGGCATATAGACAGTAAGGAGTTCAGGTTCCAAATTGTGGAGCGTGTTCTTGGCGAGGACT TATTTCCAGCTAATCTTTCTGCTGAAGAGAGGAGCAAACATTGGGTTCATATAGTTTCTCTTTTCACTCCTCCACACTGGAAGGTCCTGTCCTCTGTTCT GTCTCAGAAAAACAGTTACATGAAATTTTGTGCTGCTATGGGGATTAGTTTGGAAGTGATGGAGAGTAAAATAAAAAAGTTAGTCATAAATATGTCGGCG TTTTTTCCTGATCCCTCCAAGGCTGCAGAATGCTTTAATAGTTTGAACCAAATGAAAGACTGCAATGTTTTCAGTACCCTGGAGTTACTACTAAGAGATT CAGCGATTACTGATGTGCAAGTGAATAGGGATAAATTTCAGAAAGTGATTGGAGACAAACATCCACAACATGATTTTCTACAATTACTTTCTTCTAAGTG TTCTTTTACCATATTCAACTCGGAGATCATACGCTGTATCTTGCTTAATATTTCCAGCAACGTGCATGAAAGCAAACAAAAGGAGGCTTCTGCTAAACTC CTTATGGCTGTCATCAGTGCTTTCCCCTTTCTTTTAAGGGGTTCAGAAAAGGAAGTTCAGATGCTGTTGGACGATAATACTCTCACAGCAGTGCTGATTG AAGTACTAGCAAAAGCGGGTTCCCAAATATCTGCCAACTTGAGTGATTTCTACCCGTTTCTTAGGAAAGTGTCTTTGGAAGGAACTCGTGTTCAGGCAAA GCATGCTGTTTCAGCATTCGTTTCACTGGCTGGTTCTTCCGAGCAAGCTGCTCTATCACAATTTTGTGAGGAACTTGTCAATTCTCTTCGTTGTGGGTGG AACACTTCAACTGTGTTACAGTCTCTGGGCTGTATTATGCGGCATTCTGTATCGGCATCTGAGATACATGGTGAAGAGATCAGATCGTATATATTTGATA TAATTTTCAAATTGAATCAATCTGACGATCCAATGTGTTCTGGGGAGATGTTGAACTGCACGGATTCCTGTAAGCTGAAGATTTTTGCACTGAAAACACT TGTCAAGAGCTTTCTGCCAGGGCAAGGACAAGGATCTCTTTTAAAACGGAAAATTTATGAAATGCTGGGTCTTTTGTTGAAGATGCTACGGACAGGTGAC ACTTCCGATGAAGTCGTATCATGTGCAAGTGACAAGCCTTATATCCGATTAGCTGCTGCAAAATCTATTCTCCAGCTCTCGAAGAGATGGGATTTGCATA TTTCTCATAAGATATTTCAGTTGACAATATTAATGGCAAAGGACCCTTCTCCTGTAGTTAGAAGATTATTCCTTTACAAAACGCATAAGCTATTGGCGAA TCATGCTATACCTAGTAGGTATGCATGTGCATTTGCATTGGGTGCATGTGGTCCCTGTGAAGATCTGCGTGAAGCTTCGTCTAAATACATGAGAGACTTT ATCAAATATTACATCAGAATATCCCAGTTTAAGCAAATGTCTGCGGGGGAAAGAGAATCTCCTACAGATGACCCTGCATTTATGGTTTTTTTCTTGATCC ACATTCTTGCTCATGATGATGGCTTCCCACATGAGGATTGTCAAGATGAGCAAGTTTATGCTCGGTTCTGTAGTCCACTCTTTTGGGCTATACAGGAATT AACAAGGTCAACTAATGCAAACGGAAGCTTGGATTTTGCTGATTATACCATCCTGCGTTTGCTCTCTGTCTTCCGCGCAATCAAAAGAGCAGAAGATGCT GTTGATCCTCAAGGCACTCCTAAACTGCAAATTCTAGCAGATATTGGGATCTCCATTGTGAACTCATTGCGGCATAAAGGCAAGTCCGTATCACAGAAGC CAGGACCAGTTTTGCTGCCATCATCATTATATAAATTAAGTCCAGTTAAGAACTCCAATGAAGTTAACTTGAAATGCATCAGCAGCTCCGCGGATCGTCA AAATTTATTCAGTAGGCTCATTCCAATTCTGAAGTCCGAAGTAGTCATCTCTGCCGAGACTTCTAATAAACGTGGTAGGGATAGTCATGAGGATAAGCTG CATTCTGGAGATGTTGAGTTTAGTCATTCACTAAGTTCGGAATTGTGCGAGCATATCCATTTGCAAAATCTGATTTTGACAGAAGCCCAGGCAACAGTGG CTGGGGATTTCAGCTTGGGACGTTTATTAGAAGAAGCTCTTTCACCCACCGTTGAAACTGACCATTACAGTGACGCCACATCAACAGAGGTCAACCAAGG TCGTGCCTCTAAGTTTGAAAAGCCCATCTTGTCCAGTTCGCCCATATTGTCTGGTCCTGCAACTGCCACGCCTTCTGTGCTGCAGCATGATGTACTACAG CAAAAGTCGGACGGAAATGTTTCATCATTGCAAGTGAATAGCGGTACTGCTGATAATAGTGCAGAGATGGAGTTGATACGTTTGGATGATGAAACATGCA ATAATGCTAAGAGTAATTGCTCGACAGAAAAGTACCAATCTGGATTTCTGGTTGCAGAAGCAAAGGGAAAGGAAGGTCGCCAAGTTCTCCCCAAGACAAC TGCATCAGACGAATCGCAGGCAATATAA
AA sequence Show only first row Show all	>Lus10018180 pacid=23145222 polypeptide=Lus10018180 locus=Lus10018180.g ID=Lus10018180.BGIv1.0 annot-version=v1.0 MDTTPLKRVSEVGVELSRLTRPGKDSLIKLLRDVADVLAQIEHTSFLENSAKAEAPKKQAAALKPLKESIVKRGLQRHTDRDVKLLVSVCVAELFRIQAP ETPFDDKYLGDVFKLLLGTFSELADVDSPYFGKRASVLETVAKCECYVIMLDIGCGDLVVEMFNIFFSVARGHRGSSVERNILHIMSRIIDEEPSQRLVD VILQNLIKEEEGPSRLAVSIIHKFHDTLKPSVCRFLTSCFLERDGVESEVKESYHDILFQVYKHEPEMLLNVIPYLTEELRTDQVDVRLKAVTLLGKLLA LRGDHFAQQHHNVLMEFKNRFSDKSVGVRLSALQCAKASYIANPRGKLSEEIIGKSFSAFEGRLLDFSDDLSVRKKALVKLMELYRDYCSKCSQRLMAIE DHFEQIPSKVLMLWHIDSKEFRFQIVERVLGEDLFPANLSAEERSKHWVHIVSLFTPPHWKVLSSVLSQKNSYMKFCAAMGISLEVMESKIKKLVINMSA FFPDPSKAAECFNSLNQMKDCNVFSTLELLLRDSAITDVQVNRDKFQKVIGDKHPQHDFLQLLSSKCSFTIFNSEIIRCILLNISSNVHESKQKEASAKL LMAVISAFPFLLRGSEKEVQMLLDDNTLTAVLIEVLAKAGSQISANLSDFYPFLRKVSLEGTRVQAKHAVSAFVSLAGSSEQAALSQFCEELVNSLRCGW NTSTVLQSLGCIMRHSVSASEIHGEEIRSYIFDIIFKLNQSDDPMCSGEMLNCTDSCKLKIFALKTLVKSFLPGQGQGSLLKRKIYEMLGLLLKMLRTGD TSDEVVSCASDKPYIRLAAAKSILQLSKRWDLHISHKIFQLTILMAKDPSPVVRRLFLYKTHKLLANHAIPSRYACAFALGACGPCEDLREASSKYMRDF IKYYIRISQFKQMSAGERESPTDDPAFMVFFLIHILAHDDGFPHEDCQDEQVYARFCSPLFWAIQELTRSTNANGSLDFADYTILRLLSVFRAIKRAEDA VDPQGTPKLQILADIGISIVNSLRHKGKSVSQKPGPVLLPSSLYKLSPVKNSNEVNLKCISSSADRQNLFSRLIPILKSEVVISAETSNKRGRDSHEDKL HSGDVEFSHSLSSELCEHIHLQNLILTEAQATVAGDFSLGRLLEEALSPTVETDHYSDATSTEVNQGRASKFEKPILSSSPILSGPATATPSVLQHDVLQ QKSDGNVSSLQVNSGTADNSAEMELIRLDDETCNNAKSNCSTEKYQSGFLVAEAKGKEGRQVLPKTTASDESQAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77600			ARM repeat superfamily protein...		Lus10018180 [exp]	0	1
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10018341 [exp]	1.0	0.9850
AT3G57060			binding (.1.2)		Lus10027308 [exp]	2.8	0.9743
AT3G57060			binding (.1.2)		Lus10039013 [exp]	5.3	0.9596
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	9.2	0.9576
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	9.2	0.9410
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	9.2	0.9639
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	9.4	0.9515
AT5G48310			unknown protein		Lus10016071 [exp]	9.5	0.9558
AT5G48310			unknown protein		Lus10025189 [exp]	10.9	0.9558
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10043295 [exp]	11.3	0.9406

Compare expression of checked genes

Lus10018180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.