Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33070 655 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G54960 649 / 0 PDC2 pyruvate decarboxylase-2 (.1) AT5G01320 642 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 632 / 0 PDC3 pyruvate decarboxylase-3 (.1) AT3G48560 46 / 6e-05 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025654 [exp] 991 / 0 AT5G54960 686 / 0.0 pyruvate decarboxylase-2 (.1) Lus10003384 [exp] 680 / 0 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10002217 [exp] 677 / 0 AT5G54960 1061 / 0.0 pyruvate decarboxylase-2 (.1) Lus10005048 [exp] 652 / 0 AT5G54960 1067 / 0.0 pyruvate decarboxylase-2 (.1) Lus10027820 [exp] 639 / 0 AT5G54960 1058 / 0.0 pyruvate decarboxylase-2 (.1) Lus10015291 [exp] 638 / 0 AT4G33070 978 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10016751 [exp] 49 / 1e-05 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 47 / 2e-05 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 46 / 7e-05 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120100 [exp] 674 / 0 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 664 / 0 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 632 / 0 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 620 / 0 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 619 / 0 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.012G098300 [exp] 54 / 3e-07 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10018181 pacid=23145203 polypeptide=Lus10018181 locus=Lus10018181.g ID=Lus10018181.BGIv1.0 annot-version=v1.0 ATGTGTTCCTCAGCCGACCCCACGATGGGCCGCCACCTGGCCCGACGCCTCGTCCAGATCGGAGTCACCGACGTGTTCTCCGTCCCGGGAGACTTTAACC TGACACTCCTCGACCACCTGATCGCCGAGCCACGCCTCAATTTGATCGGCTGCTGCAACGAGCTTAACGCTGGTTACGCCGCCGACGGCTACGCCAGATC CCGCGGCGTCTCCGCCTGCGTCGTCACGTTCACAGTCGGCGGCCTTAGCGTCATCAACGCCATCGCCGGAGCCTACTCACGTAACCTCCCCGTGATCTGC ATCGTTGGCGGACCAAACTCCAACGACTACGGTACCAATCGGATCCTCCACCACACGATAGGACTCCCGGATTTCACGCAGGAGCTCCGCTGCTTCCAGG CCGTTACCGCCTTCCAGGCGGTGGTGAATCATCTCGAAGACGCGCACGAGCTGATCGACAGAGCGATTTCAACTGCTCTGAAGAAGAGCAAGCCGGTTTA CATCAGCATCAGCTGTAACCTTCCAGCGATTCCTCACGCCAGCTTCCTCGGCGAGGATCCCGTTCCGTTCTCGCTTATTCCAAAGGTGAGCAATCAGGTA GGACTCGAATCCGCCGTGGAAGCGGCAGCTGAGCTCCTCAATGCAGCTGCCAAACCGGTCTTGATCGGCGGTCCGGAAATCAGACTTACAAATGCACGCA AGGTGTTTGTGGAATTGTCTGACACTTGTGGCTACGCAATTGGCATGGTTCCTTCAGGCAAAGGCTTGGTGCCAGAGGACCATCCGAAGTTCGTCACCAC AGGAAGCGAGATTGTCCAATCCGGTGCCGATGCTTATCTGTTCGTCGGAGTGCCGGTCTACAACGACCTGGTAGTTGCTAAGCAGGAGATGGCTGTAATC GTGCAGCCAGAACGCGTCGCCATTGGTAACGGACCTGCGTTCGGATGTATTGTGATGAACGAATTCCTCACCGCTCTTATCGAAAAGCTCACGCCAAACA GCGCTGCCTATGATGAACACGCCAACGGCTCCAAACCGGAACAGGAAGAACACGGTGATGATGATCAAGAGCAGACTAAGGACCATGTGAAGGCGAAGGT GTTGTTCAAACACGTGGAGAAGATGTTATCAAGCGAAACTGCTCTGATAGCCGAGACAGGGGAATGGTGGAAGTTTACTCAAAAGCTCAAGCTACCAAAT GGCTGTGGGTACGAGTACGGATCCTCGATGGGTTGGTCAGTTGGGGCGAGCCTTGGGTACGCTCAGGCCGACCCAAAGATACGAGTGATTGCTTGTGTTG AGGATCGTAAGTTTCAGGAGACTGTTCAAGATGTTTCGACGATGATCAGGTGCGGTCAGAAGAGTATCTTCTTCATTGTGGTGCTGATGAACGAGAACAG TTACTGCTGTAAGAAGTGGGACTATACAGGAATCGTTGACGCGCTACATAATGGGGAAGGAGATTGCTGGACAACAAAGGTCACTTGCGAAGAGGAGCTC GTGCAAGCGATCGAGGCTGCTACTGGTGGGAAGAAAGACTGTATGTGCTTCATCGAGGTTGCTGTTGGTTACGAAACAGTTGAGCCAGATCAAGCAAGCT AA
AA sequence Show only first row Show all	>Lus10018181 pacid=23145203 polypeptide=Lus10018181 locus=Lus10018181.g ID=Lus10018181.BGIv1.0 annot-version=v1.0 MCSSADPTMGRHLARRLVQIGVTDVFSVPGDFNLTLLDHLIAEPRLNLIGCCNELNAGYAADGYARSRGVSACVVTFTVGGLSVINAIAGAYSRNLPVIC IVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAVTAFQAVVNHLEDAHELIDRAISTALKKSKPVYISISCNLPAIPHASFLGEDPVPFSLIPKVSNQV GLESAVEAAAELLNAAAKPVLIGGPEIRLTNARKVFVELSDTCGYAIGMVPSGKGLVPEDHPKFVTTGSEIVQSGADAYLFVGVPVYNDLVVAKQEMAVI VQPERVAIGNGPAFGCIVMNEFLTALIEKLTPNSAAYDEHANGSKPEQEEHGDDDQEQTKDHVKAKVLFKHVEKMLSSETALIAETGEWWKFTQKLKLPN GCGYEYGSSMGWSVGASLGYAQADPKIRVIACVEDRKFQETVQDVSTMIRCGQKSIFFIVVLMNENSYCCKKWDYTGIVDALHNGEGDCWTTKVTCEEEL VQAIEAATGGKKDCMCFIEVAVGYETVEPDQAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33070			Thiamine pyrophosphate depende...		Lus10018181 [exp]	0	1
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	7.9	0.7177
AT3G45090			P-loop containing nucleoside t...		Lus10021446 [exp]	9.9	0.7353
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	12.5	0.7378
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	20.7	0.7278
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	29.3	0.6524
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	29.4	0.7194
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	31.6	0.6960
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	37.3	0.6887
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020588 [exp]	38.8	0.5969
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	42.0	0.6660

Compare expression of checked genes

Lus10018181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.