Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36230 623 / 0 ARM repeat superfamily protein (.1) AT1G65220 608 / 0 ARM repeat superfamily protein (.1) AT3G21110 540 / 0 PUR7, ATPURC PURIN C, purin 7 (.1.2) AT4G18300 56 / 8e-08 Trimeric LpxA-like enzyme (.1) AT2G34970 56 / 1e-07 Trimeric LpxA-like enzyme (.1) AT3G02270 51 / 3e-06 Trimeric LpxA-like enzyme (.1) AT1G77840 47 / 5e-05 Translation initiation factor IF2/IF5 (.1) AT1G36730 45 / 0.0002 Translation initiation factor IF2/IF5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025652 [exp] 738 / 0 AT3G21110 573 / 0.0 PURIN C, purin 7 (.1.2) Lus10042703 [exp] 719 / 0 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1) Lus10029667 [exp] 379 / 2e-126 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10033841 [exp] 54 / 4e-07 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10004057 [exp] 54 / 4e-07 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10018991 [exp] 54 / 4e-07 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10002283 [exp] 52 / 1e-06 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 50 / 8e-06 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10010980 [exp] 48 / 2e-05 AT1G36730 184 / 2e-55 Translation initiation factor IF2/IF5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053600 [exp] 678 / 0 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1) Potri.013G085600 [exp] 676 / 0 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.017G051500 [exp] 588 / 0 AT3G21110 592 / 0.0 PURIN C, purin 7 (.1.2) Potri.005G045200 [exp] 57 / 4e-08 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.017G122200 [exp] 47 / 4e-05 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.004G093600 [exp] 45 / 0.0002 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01259 [flax] [poplar] SAICAR_synt SAICAR synthetase CL0020 [flax] [poplar] TPR PF02020 [flax] [poplar] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Lus10018182 pacid=23145198 polypeptide=Lus10018182 locus=Lus10018182.g ID=Lus10018182.BGIv1.0 annot-version=v1.0 ATGATTCATCAACGTGCTGATCTCCAAGTTGGATGCATGCAATCTAACGACTACCATGCACTAGTGATTAATCCATGTCAAGTTGGTTCTTTCCTAAACC ATGACAAGCTTCCACTTCTTCTTCCAACAGCTTCCACTTCTTCATTCCTAGTCCCCGCCGGCGGCTCCAGCTCGCCCCGGCCTCTCTGCCGCTGTCCAGC CGCCGTCCGGCTCCAACAGGCACCAGAGATGGTACAGAGTATGAGAACTCTAAACCCTCCCAAAACCCTTGTAAGCAACAAAGAGAGGCTTTTGTTTCCC AGTTCTGTTTCTTCTGCTGCTGCTTCAATCTCGTCATTTCAACCGAAGCCCAGGCGAATTTCTGGAAGAATCTCTACCTCTGCAATGCTGCAGCCCAAAA GGAGTGAGCTCAAGCTGGATAAACTGACTATGGATGCTATGTTCGATGGCGGCCGCAAAGAAGAGGTTATTGGTGCTATTGAGGGCGGCCTGTCCAATTG CCTTTCCGAGACGAATCTTCATTTGACTGTTCCAGGTCTCAAATCCAAAGTTAGAGGAAAGGTGAGGGATATATATGATGCTGGAGAGTACCTTGTTCTA ATAACTACTGATAGGCAGAGTGCATTCGATCGAGTTCTTGCTTCCATTCCTTTCAAAGGACAAGTTCTTAATCAGACTAGCCTATGGTGGTTTGATAGAA CATCTCATATAACTCCCAATGCTGTTGTTTCTGTTCCTGATAAGAATGTCACAATTGCCAGAAAATGCTCGGTCTTCCCTGTTGAATTCGTAGTTAGAGG ATTTGTGACAGGAAGTACCGATACATCGTTATGGACGGTATACAATAAAGGTGCCCGGAACTATTGTGGCAATGCTTTACCTGATGGCTTGGTGAAAAAC CAAAAGCTACAAGCAAATATACTAACTCCAACAACTAAGGCTGCGGATCATGATGTCCCGGTAACTCCAGAAGAGATAATTAAACTTGGACTAATGACGG AAGCTGAGTACACTGAAGCCAGTGAGAAAGCATTGAGGTTATTTGAGTATGGTCAGCGTGTGGCTTTGGAACACGGCTTAATATTGGTGGACACAAAATA CGAATTCGGAAAAGGCTCAGATGGTTCGATTCTATTGATAGATGAGGTGCATACACCTGACTCAAGTAGATACTGGATCGCTCATTCTTACAAGGAACGT TTTCAGAACGGCCTCGAACCTGAAAACGTCGATAAGGAGTTCTTGAGGTTGTGGTTCAAGAATCATTGCAACCCTTATGAAGACAAGGTACTCCCTGATG CTCCAGAAGAACTTGTTACCGAGCTAGCTTGGCGGTACATATTCTTGTACGAAACCATAACGAATTCGAAACTCGACCCACCATCGATCGAGGTAGGTAT TGAATTCCAGAGTGGTTTGCGCAAGGGAGAAACAACCGTTTGCTTTTGGAAGAGAAGACGTTCAAGCTCAAAGGAGAGACCCACTCTTGGTGGCACGCGG ATTAAGACCCGCAAACGGAACATTGCATCGTCGCTGGACCCTGCAGCATTTTCGGATGCAGTGGTCCAGATCTACCTAGATAATTCTGGCGATTTGGATG ACAGTATGTTGATCTTTGACCCGCTCCTTTTGCAGGTTATTTTCACAGGAGGTCGTACCCAACCCGGCACAACAAAACCCGATGAGGGCGAACGACACCC CTACTCCTTTCTAGACAGCGAGCCCCACCGTGAAGCTATTCTGCCTTCTGTAATTTACGTACAGAAGATTCTACGCCGGAGGCCATTTCTCATCAAGAAC CTCGAAAATGTCATGCGGAGGTTTCTCCAGTCGCTGGAGCTCTGCGACGAGAATGAGAGGAAGAAGCTGGCAATATTCACAGCGCTTGCATTCTCCCAGA AACTATCGGGACTTCCGCCGGAGTCGGTCTTGCAGCCACTGCTCAAGGATAATCTTGTGGCGAAAGGAATAGTTCTTGCGTTTATAACCGACTTCTTTAA GGAGTATTTACTGGATAACAATCTTGATGACCTTATATCCATGCTGAAGAGGGCTAAAGTGGAAGACAATCTTCTGGTTTTCTTCCCAACTTCAAAGCGC ACTGCTGAAGCCTTTTCTGAGCATTTTACCAAGGAAGGAATGCATCAATTGGTTGAGTACAACGAGAAGAAAATATTCGACGAGAAGTTGAAGGACATGA AGTCTGCTCTAACAACTTTAATAGCCGAGGAGGCTGACCAAGAAGAGGTTCTAGAGGTTGTTAAGCAACGTGTCGCTGATGCTAAGCTTCCGGAAATCGA AGTTGTCCGAATTCTGTGGGATGTGTTGATGGATGCTGTTCAGTGGTCTGGGAAGAACCAGCAGCAGAACTCTAATGCTGCTCTGCGCCAGGTGAAATCC TGGGCGAAGCTGTTGAACACCTATTGCACAAGTGGGAAGCTTGAGCTGGAACTTCTGTACAAAGTGCAGATGCAGTGCTATGAGGACACTAAGCTGATGA AACTGTTTCCTGATATAGTTAGGTCTCTCTATGACCAGGATGTGCTTGCTGAAGACACTATCCTCCATTGGTTCCGCAAAGGGACCAACCCTAAGGGCAG GCAAACCTTTGTGAAGGCCTTAGAGCCATTCGTTAACTGGCTTGAAGAGGCCGAGGAAGAGGAATAA
AA sequence Show only first row Show all	>Lus10018182 pacid=23145198 polypeptide=Lus10018182 locus=Lus10018182.g ID=Lus10018182.BGIv1.0 annot-version=v1.0 MIHQRADLQVGCMQSNDYHALVINPCQVGSFLNHDKLPLLLPTASTSSFLVPAGGSSSPRPLCRCPAAVRLQQAPEMVQSMRTLNPPKTLVSNKERLLFP SSVSSAAASISSFQPKPRRISGRISTSAMLQPKRSELKLDKLTMDAMFDGGRKEEVIGAIEGGLSNCLSETNLHLTVPGLKSKVRGKVRDIYDAGEYLVL ITTDRQSAFDRVLASIPFKGQVLNQTSLWWFDRTSHITPNAVVSVPDKNVTIARKCSVFPVEFVVRGFVTGSTDTSLWTVYNKGARNYCGNALPDGLVKN QKLQANILTPTTKAADHDVPVTPEEIIKLGLMTEAEYTEASEKALRLFEYGQRVALEHGLILVDTKYEFGKGSDGSILLIDEVHTPDSSRYWIAHSYKER FQNGLEPENVDKEFLRLWFKNHCNPYEDKVLPDAPEELVTELAWRYIFLYETITNSKLDPPSIEVGIEFQSGLRKGETTVCFWKRRRSSSKERPTLGGTR IKTRKRNIASSLDPAAFSDAVVQIYLDNSGDLDDSMLIFDPLLLQVIFTGGRTQPGTTKPDEGERHPYSFLDSEPHREAILPSVIYVQKILRRRPFLIKN LENVMRRFLQSLELCDENERKKLAIFTALAFSQKLSGLPPESVLQPLLKDNLVAKGIVLAFITDFFKEYLLDNNLDDLISMLKRAKVEDNLLVFFPTSKR TAEAFSEHFTKEGMHQLVEYNEKKIFDEKLKDMKSALTTLIAEEADQEEVLEVVKQRVADAKLPEIEVVRILWDVLMDAVQWSGKNQQQNSNAALRQVKS WAKLLNTYCTSGKLELELLYKVQMQCYEDTKLMKLFPDIVRSLYDQDVLAEDTILHWFRKGTNPKGRQTFVKALEPFVNWLEEAEEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	0	1
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	6.0	0.7969
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	6.9	0.8279
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10037898 [exp]	8.5	0.7787
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	11.3	0.8186
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10041853 [exp]	11.5	0.8081
AT5G24650			Mitochondrial import inner mem...		Lus10032913 [exp]	21.5	0.7591
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	23.0	0.7487
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	23.7	0.7810
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010770 [exp]	27.0	0.7708
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	28.1	0.7833

Compare expression of checked genes

Lus10018182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.