Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27460 296 / 1e-97 Cystathionine beta-synthase (CBS) family protein (.1) AT5G53750 286 / 2e-93 CBS domain-containing protein (.1) AT1G65320 101 / 1e-23 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025651 [exp] 723 / 0 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10029665 [exp] 525 / 0 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10042702 [exp] 525 / 0 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10011457 [exp] 114 / 6e-28 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1) Lus10037535 [exp] 113 / 1e-27 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041000 [exp] 492 / 2e-174 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.011G050500 [exp] 462 / 8e-163 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) Potri.001G402900 [exp] 383 / 3e-131 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.011G122000 [exp] 373 / 2e-127 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.013G087100 [exp] 120 / 4e-30 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.019G052650 [exp] 112 / 2e-27 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018183 pacid=23145258 polypeptide=Lus10018183 locus=Lus10018183.g ID=Lus10018183.BGIv1.0 annot-version=v1.0 ATGGCAGATAGTTTGTTGGCTCGGGAGGTATCCGATCTATGCCTGGGGAAGCCTGCTCTCAGATCTCTAACCGCCTCCGCCACCGTCGCCCAAGCTCTCC TCGCTCTCCGCCGGTTCGGCGACTCGTACGTTAGCGTGTGGAGCTGCAACCACCGTCAGATCAAATCTCCAGATGTAGGCAGCAAATGCCGGTGCGTCGG CAAGGTTTGTATGGTGGACGTCGTCTGTTTCTTGGCTAGAGAAGAGAATCTCAAGAATCCCGCGATTGCTCTTCAGAAGCCATTGTCGTTTCTTCTCGAC GGCATTCCGCTTGGCATCGTCCGTCATTTGGAGCCTCACGCTAGTTTGTTGGAAGCGATAGATCTGATACTGGAAGGAGCGCAGAATCTTGTGATACCGA TTCACAGCCGATTCTCGTCGAGGAAGAAGCTGATTCAGAGGAATTCCGTTTCCGTCAGCTCGACGGTGCATAACGGCGGCGAGTACTGCTGGTTGACGCA GGAGGATGTAATCCGGTACCTCCTCAACTGCATCGGCTTCTTCTCTCCACTTCCTAGCCAAACAATCGAGTCTCTAAACATCATCGATAAGGAATCAGTA TTGGCCGTCCGTTACGACGATCCCGCAGAGTCTGCTCTGCCGCTGATCTCCCAATCTCTGGCTAAGCACACCTCCGTCGCGATTCTGGACGACCAAGGGA GACTGGTCGGAGAAATCTCACCGGCAGCTCTAAACTACTGCGACGAGTCCGTGGCGGCAGCAGTCGCCACTCTTTCGGCCGGAGATCTGATGGCGTATGT TGACTGCTGGGGCGATCCGCCTGAGGAGCTGGTGCAGCTGGTGAAAGAGAGGCTGAAGGCGAAGAATCTGGAGGCGGCGGTGGAGTTGATCGAGGAAGAT TCGTCTTCGGGTCTGTCATCGGTATCGTCGATGTCGTCGTGCTCGTCTTCCGATGAGGAATTCGGCGAGAGAAGTGTCAATTGGAATTCGCCGAAAGTGG TGAGGAATACGGAGGATATCGTGTGCTATCCGTGGAGCTCGTTGGTAGCTGTGATGATCCAAACACTGTCGCATCGGACTGGATACATTTGGGTGGTGGA AGACGACGGGTGTTTGGCCGGAGTTGTTACCTACGCGGCAATGACCAAAGTTTTCCGGGAACGGTTGAAATCAATGGCCTAG
AA sequence Show only first row Show all	>Lus10018183 pacid=23145258 polypeptide=Lus10018183 locus=Lus10018183.g ID=Lus10018183.BGIv1.0 annot-version=v1.0 MADSLLAREVSDLCLGKPALRSLTASATVAQALLALRRFGDSYVSVWSCNHRQIKSPDVGSKCRCVGKVCMVDVVCFLAREENLKNPAIALQKPLSFLLD GIPLGIVRHLEPHASLLEAIDLILEGAQNLVIPIHSRFSSRKKLIQRNSVSVSSTVHNGGEYCWLTQEDVIRYLLNCIGFFSPLPSQTIESLNIIDKESV LAVRYDDPAESALPLISQSLAKHTSVAILDDQGRLVGEISPAALNYCDESVAAAVATLSAGDLMAYVDCWGDPPEELVQLVKERLKAKNLEAAVELIEED SSSGLSSVSSMSSCSSSDEEFGERSVNWNSPKVVRNTEDIVCYPWSSLVAVMIQTLSHRTGYIWVVEDDGCLAGVVTYAAMTKVFRERLKSMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27460			Cystathionine beta-synthase (C...		Lus10018183 [exp]	0	1
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	6.6	0.7153
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	22.7	0.7148
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	28.2	0.6267
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	28.6	0.6769
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	64.2	0.6284
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	64.7	0.5919
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10033570 [exp]	78.3	0.6200
					Lus10042115 [exp]	83.5	0.5527
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	88.5	0.6093
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10009637 [exp]	117.1	0.5487

Compare expression of checked genes

Lus10018183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.