Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025650 [exp] 1041 / 0 AT5G41950 47 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050600 [exp] 479 / 3e-160 AT5G41950 49 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018184 pacid=23145237 polypeptide=Lus10018184 locus=Lus10018184.g ID=Lus10018184.BGIv1.0 annot-version=v1.0 ATGAAAACTCCAGTCCTCAACTCAATCATCAACTCCAGCTTCCACCTATCTCCTCCAATTTTCCTCTTCCACTTCCCATCCCGACACAACTCTCATCTCC TCTACATTCCACATAGCAAGCTCCGCTCCTCCACTATCCGATTCGCCGCATCTGCTACTAATTGCCGCGGCTGGGACGATGTCCACCAGCTCCGCAGCGA CTGGGCGAGCTCTGGTGAGTCATTCGAACTCCGCGACTTCGTAGCATCCGTAGGAATCAGCGATAAGAAGTACGGATTCACTTTTCTGCTAGGTATTGTG TTCGCTTTCGCGTTTTCCAGGGTTAAGATTTCGTATATCGCTTTGGTTCCGGCTTCGGCTGTGGTGTTTGCCGCTGGATTTTCTTTCGGATTTGTCCGCA GCGGTGGTGGAGTTGATTTGTTTAGTGTCGGTAAAGTTAAGAAGAAGGGGAAGGAATCGACTAGTCCTAGGATTTATAACGATGCTGTAGAGGAGTTTCT TAATGAGTTCGAGCTTAAGGTGAATGAACTGAAGAAGAGTTTGTTTAGAGCTATTGATATTAAGGAAATTAGGATGGATGAACTCGAACGTTATGCTGAT GTGATTGAAGCAATGCAGAAATCTGCATTGAACACTAGAAATGCTATCGAATCCGAGATTGATGGTGCTAAACTTGATAATCGTAAACTGCCAAGCAGAA GAAGCAAAAAGATTGGCGAGGTTGGATATGAATTTGTACAGTTTGTTGGAGGAATTTTTGCAGGCAGAAAGGTTGTTAGTGCAAAACCTAACAAGGTCAA AGAGAATGGCAATCCTAAACAAGCCGATCCTGTTAGTTTGTCGAGTAATCGAGCTTGGGGAATCAAAGAAGGTGTTGATAATGACTCCAAAGGTAGCAGT AGTAGTTTTGTTTCCTCTGGAGGTGCTTCCAGTAAGTTTTCTATGGACTGGGATGGAGAAAGGAGGATTAGAATCATTTCGGAAAGTACAGAAATGGATC CAGAAGTAGTTCTTGAGGGTGCAAAGAGGTTTCCCGGTGTTGAGGAGGATTATTGGCAAAATGATCGTTCGTTTGCACGAGAGACAAGTCTTGAGGATTC TAACGGAGCATACAGCTACCGAACCAGGGAGAGAAACAATGGAGAAACGTTTAGTTCTAGGTTCCGAGAAGAGAGACTGAACGATGATGTGGAAGGCTCT TATTCGTCAGCAGTTTCAGTTGATGCAGCATTCAACAGGTATCTTACTGAGGCGAACAACCTGCTTAAAGAAGCCAAAGAGTGCATTAGAACGAGACAAG ATGAAGAACATGGGGAAGTCATGTTATACAAGTCTGCTAAATTGCTGTCCAAGGCCATAGCTTTGAAGCCTATGAGTTTCTTAGCCGTCGGGCAGCTGGG GAATACTTACCTTCTTCACGGCGAGCTGAAGCTGAAAATCAGCCGTGAATTGAGAGCCACCCTCTCGACATGGGGTCCCTTGTCTTTCGAGAATCAGGCT CCTTCGATGCGTGTGGAACGCGGTGAACTGAGACGGAAAGATAAGCTTGTGGAAGTACTTAGTAATGTTTGTGAAGAGTGTGAAGAGCTTCTTGTGGAGG CTGGAAGAAACTACAGATTGGCTTTGTCGATTGATGGGAATGATGTTAGAGCTCTTTATAATTGGGGGCTTGCTCTAACGTTTCGTGCTCAGTTGATTGC TGATATTGGACCCGAAGCTGCATTTGATGCAGACAAGTTGTTCTTGGCTGCCACTGATAAATTCGACGCTATGATGTCTAAAAGCAATGTTCATGCACCA GATGCATTGTTCAAATGGGGCGTGGTCCTGCAACAAAGATCTCAGTTGCGGCCTCCTAACAGTAGAGAGAAAGTGAAGCTGCTGCAACAGGCGAGAAGAC TGTATGAAGACGCTCTTGTTATGGACTCCGACAACGTCCAAGTTCGAGAAGCGCTGTTGTCGTGCACTTCTGAGCTCAGCCGCCGATCGTTCAGGTCGTT TTAA
AA sequence Show only first row Show all	>Lus10018184 pacid=23145237 polypeptide=Lus10018184 locus=Lus10018184.g ID=Lus10018184.BGIv1.0 annot-version=v1.0 MKTPVLNSIINSSFHLSPPIFLFHFPSRHNSHLLYIPHSKLRSSTIRFAASATNCRGWDDVHQLRSDWASSGESFELRDFVASVGISDKKYGFTFLLGIV FAFAFSRVKISYIALVPASAVVFAAGFSFGFVRSGGGVDLFSVGKVKKKGKESTSPRIYNDAVEEFLNEFELKVNELKKSLFRAIDIKEIRMDELERYAD VIEAMQKSALNTRNAIESEIDGAKLDNRKLPSRRSKKIGEVGYEFVQFVGGIFAGRKVVSAKPNKVKENGNPKQADPVSLSSNRAWGIKEGVDNDSKGSS SSFVSSGGASSKFSMDWDGERRIRIISESTEMDPEVVLEGAKRFPGVEEDYWQNDRSFARETSLEDSNGAYSYRTRERNNGETFSSRFREERLNDDVEGS YSSAVSVDAAFNRYLTEANNLLKEAKECIRTRQDEEHGEVMLYKSAKLLSKAIALKPMSFLAVGQLGNTYLLHGELKLKISRELRATLSTWGPLSFENQA PSMRVERGELRRKDKLVEVLSNVCEECEELLVEAGRNYRLALSIDGNDVRALYNWGLALTFRAQLIADIGPEAAFDADKLFLAATDKFDAMMSKSNVHAP DALFKWGVVLQQRSQLRPPNSREKVKLLQQARRLYEDALVMDSDNVQVREALLSCTSELSRRSFRSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	0	1
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	2.4	0.8624
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	2.8	0.8646
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10025653 [exp]	4.5	0.8453
AT4G02720			unknown protein		Lus10022052 [exp]	6.0	0.8553
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	6.2	0.8230
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	6.6	0.8552
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	8.5	0.8337
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	9.4	0.8380
AT2G40860			protein kinase family protein ...		Lus10024475 [exp]	9.4	0.7754
AT5G22040			unknown protein		Lus10000457 [exp]	9.9	0.8190

Compare expression of checked genes

Lus10018184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.